Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAGgtctgtagcattcattgatctgtagtcaaatccttttttttttttcatgcatcactgtctaaaattgcttgcaagtaatttaatctctatcactgtgttt...

Basic information

species Vitis vinifera
transcript Vv01s0011g02530.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G18930.1 (Glycine max), 5'ss of exon 2
GGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAGgtctgtagcattcattgatctgtagtcaaatccttttttttttttcatgcatcactgtctaaaat-tgcttgcaagtaatttaatctctatcactgtgttt----------------------------
||||||||| | |||||||||||  |||||||| ||||||||||||||  |||| ||| | ||||| ||||||||||||||| |   |||| || ||| ||     ||  || |  ||     |   ||   |||| | | | || ||  || |   ||| | ||   ||      |                             
GGTAGGCTATAAATGGATTACAAAGTTTCTTGCCCTTGGTTGTTATGCAGTACTCCTTTTCCCAGGCTTTATTCAAGgtctgaa---ttcagtggtctataac---attattctcattcgaataattatgcatgtccagattctgatttgaaatgcattagtatcacccatcaatatcacatatccattgcccttctgttttatag

upper sequence: Vv01s0011g02530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G26120.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAGgtctg--tagcattcattgatctgtagtcaaatccttttttttttttcatgcatcactgtctaaaattgc-ttgcaagtaatttaatctctatcactgtgttt
|||||| || |||||||||||||||||| | |||||||| |||||||| || ||||| |||||||| |||||||||||| ||  |  |||  | | ||  |   ||   | || | | ||||||   | ||   |    ||| || | |||| |    |||   || ||    ||     
GGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAGgtttgtttgacatctactaattagggatct--ttctctctctttttttgag-atagttactaaaagtttcattgctaaaggttttgactttact-ttgcag--