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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaagaatagtttgtggtaatggataactgattatgtgttgctccttgtaatttgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g02460.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 2
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaagaatagtttgtggtaa---tggataactgattatgtgttgctcc---ttgtaatttgtag
||||||||||| ||  | ||||| |||||||||   || | | |||| || || |||||||||||||| |||||||||||||||||||| ||||| ||||||||  || ||    | ||     ||  || ||||  | | |   ||  | |||     ||| ||        || ||||||| ||
CGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGgtaaaactatatc--tgagtgataaaagattgtttcagttcattttgattgactttgattgtattaactgaaattataatttgcag

upper sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 2
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgt-----agtgataagcttccaagaatagtttgtggtaatggataactgattatgt--gttgctccttgtaatttgtag
||||||||||| || || ||||| |||||||||   || |||  ||| || || |||||||||||||| |||||||||| ||||||||| ||||| ||||||||  ||       ||||||||            ||||| |  | || ||    ||||| | |    || |  |||||||||| ||
CGCCATTTGGTTTCTCTGGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTATGTCCCTAACAATAACCTTTATTTTCATCTACATGgtaaaactacatctgagtgataatagattgttt-cagtttattttgattgact-ttgattgtattaactgata-ttgtaatttgcag

upper sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G19520.1 (Glycine max), 5'ss of exon 3
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaagaatagtttgtggtaatggataactgattatgtgttgctccttgtaatttgtag----------------------------------------------------------------
||||||||||| ||  | || || ||||||||||| || | |  ||| || || |||||||| ||||| || ||| ||||||||||||| |||||||||||||| |||          |||  |   |  | | | |  | ||   |   | |  ||||||   |   |||  |    ||                                                                
CGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGgtaaagctagttcagagggctagctgaatgattgtttcatgatattttgattaa-atgtgtcagtgaatgtgttcaaaagagtgtattgctaacatttctctttgattaaatttaatctgtgctaactgaaagtgaatttgaag

upper sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G68690.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaaga--atagtttgtggtaatggataactgattatg--tgttgctccttgta-atttgtag-----
||||||||||| ||| | |||||  | || || ||||    ||  ||  ||||  ||||||| |||||| ||||||||  |||||| ||||| ||||||||||| |    ||         |||||||  | | ||| |    ||  | |    | |  |  ||   ||   |  |  | | |       
CGCCATTTGGTTTCAATCGTGGGACATTGTATCTCTGGTGACCGTAGATTGCTTATCTATGATTATGTTTCTAACAATGACCTTTACTTCCACCTTCATGgtaaagaaaaagca-----tctccaagattacattttatatatatacacacaccactgggactgacactatctacatgtctcttaaacag