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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATTATGTGGGGAAATTGGAAAGTGGGAAGGTCTTTGATAGCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacctaaccttctaataactggtttgcttgctggggcaagattgaattgcataagatacctccttggaaactcagaaaccttttgaattgggtga...

Basic information

species Vitis vinifera
transcript Vv01s0011g00930.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824721|gb|FQ414579.1|FQ414579
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|30298919|gb|CB975713.1|CB975713
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|22013355|gb|BQ798389.1|BQ798389
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|349827180|gb|FQ421453.1|FQ421453
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|351024975|gb|FQ433392.1|FQ433392
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|349815365|gb|FQ400520.1|FQ400520
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|110428480|gb|EC994954.1|EC994954
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|110398543|gb|EC964979.1|EC964979
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|26265214|gb|CA816277.1|CA816277
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|110421011|gb|EC987298.1|EC987298
EST:     GGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|349830135|gb|FQ420395.1|FQ420395
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCCGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: gi|110726886|gb|EE103061.1|EE103061
EST:     GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG                         GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGGTGATGGGGTTCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGG-TGATGGGGTTCCCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACATTATGTGGGGAAATTGGAAAGTGGGAAGGTCTTTGATAGCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacctaaccttctaataactggtttgcttgctggggcaagattgaattgcataagatacctccttggaaactcagaaaccttttgaattgggtga

- - - - - - - - - - - - - - - - - - - - -  GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagaaa