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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAGTTACAGAGGTCATCACCTCAAGTATTACTGTTGTTATAGgtcagtgtccatgggtgtgttggaagaactttagtttttttagctacattgcctttgtaaatcgtagtgtgacatgctactggaattttgtatattgccttaaccttttgttatgattgttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g00530.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G12980.1 (Glycine max), 5'ss of exon 2
GTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAGTTACAGAGGTCATCACCTCAAGTATTACTGTTGTTATAGgtcagtgtccatgggtgtgttggaagaactttagtttttttagctacattgcctttgtaaatcgtagtgtgacatgctactggaattttgtatattgccttaaccttttgttatgattgttgcag
|||||||| ||  |||||||  |||| ||||| ||||| ||||||||||||||||||||||||  ||| || ||||| ||||| || |||||||||||||||      |||||| ||          | | | ||  | |    |  | |  |||| |   | ||  |    |||        ||||  |  ||||  |                          
GTGGTCCTTAGTGTTGGAAATTTGTCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAGTTGTAGAAGTGATCACATCAAGCATAACTGTTGTTATAGgtatcccaccatggatgctcctcttagattctggtgctatgtagtgtactctcttttttt-ttgttatagaccatagagtataaattaagggtattctcca------------------------

upper sequence: Vv01s0011g00530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G03590.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAGTTACAGAGGTCATCACCTCAAGTATTACTGTTGTTATAGgt-cagtgtccatgggtgtgttggaagaactttagtt--tttttagctacattgcctttgtaaatcgtagtgtgacatgctactggaattttgtatattgccttaaccttttgttatgattgttgcag
 | || || |||||||||||| |  | ||||| ||||| ||||||| |||||||||||||||||| || ||||||||  | ||||| ||||||||||| ||| || | | | |     | ||  |  |   |||  |  |||||  ||   || | | | |         | ||||    | |||   | | ||| |                               
ATAGTTCTTAGCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCACAGCTAGTATCACTGTTGTTATCGgtacactcttctt-----tcttcaactactcttaactgattttttcctctgtttcttctctgttct----tatgac-catttctgttttctagtacag------------------------------

upper sequence: Vv01s0011g00530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G03530.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAGTTACAGAGGTCATCACCTCAAGTATTACTGTTGTTATAGgtcagtgtccatgggtgtgt----tggaagaactttagtttttttagctacattgcctttgtaaatcgtagtgtgacatgctactggaattttgtatattgccttaaccttttgttatgattgttgcag
 | || || ||||| || || || || || || ||||| |||||||| || || |||||||||||||| |||||||| ||||| || ||||| || |||||| ||        | | | |    |||    |   | |||  |||| | |   |   ||| ||| |   ||                                                          
ATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGgttagatcatgaagttatatactttggtttgaaagtggttagttta-caattcttgttttctaactttcag----------------------------------------------------------