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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGAGATGCCTCTCAGTGCAACGGTGGTTGGGGCCGTGTTGGGACTCTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtcttcaactctttgattatttgatttgatttgattctattttattttacaaaatttgtttttgatttcag

Basic information

species Vitis vinifera
transcript Vv01s0010g03830.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415766|gb|EC981699.1|EC981699
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|110392482|gb|EC957934.1|EC957934
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|27586450|gb|CB009145.1|CB009145
EST:     CTCGGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCGTGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAACC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|110402841|gb|EC963595.1|EC963595
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|33408889|gb|CF214516.1|CF214516
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|110409821|gb|EC975493.1|EC975493
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|110694543|gb|EE071739.1|EE071739
EST:     CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: gi|110721737|gb|EE097352.1|EE097352
EST:     CTCGGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC                         ATCCGTGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAACC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC