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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCAAATGCGCAGTTTTGGAGAAAAGCAAAACTTTTTCTAAACATCCACAGGCGCACTTCATCAACAATCGATCTATGGAGgtagatttcgttatctggaagaaggaattaaactattcagaagaatgcaaacttattaaaatgtttagttctcttttgatctagtgttctctttcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02570.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G37280.1 (Glycine max), 5'ss of exon 2
GGGTCAAATGCGCAGTTTTGGAGAAAAGCAAAACTTTTTCTAAACATCCACAGGCGCACTTCATCAACAATCGATCTATGGAGgtagatttcgttatctggaagaaggaattaaactattcagaagaatgcaaacttattaaaatgtttagttctcttttgatctagtgttctctttcag
|  | || ||| |||||||||||| || |||  | ||||| ||||||||||| || |||||||||||||||||||| ||||||||  |   | || | | ||  ||  |  | |  |    | ||| ||    | |||||   ||   |  | |  ||||                    
GTATTAATTGCACAGTTTTGGAGAGAAACAAGGCATTTTCAAAACATCCACAAGCACACTTCATCAACAATCGATCCATGGAGgttaaaaacattcttttgataaattatcttatttccaaaaaagcatcgtgatttattttgatcagtgatgccattttag------------------

upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G01240.1 (Glycine max), 5'ss of exon 2
GGGTCAAATGCGCAGTTTTGGAGAAAAGCAAAACTTTTTCTAAACATCCACAGGCGCACTTCATCAACAATCGATCTATGGAGgtagatttcgttatctggaagaaggaattaaactattcagaagaatgcaaacttattaaaatgtttagttctcttttgatctagtgttctctttcag
|  | || ||| |||||||||||| || |||  | ||||| ||| ||||||| || |||||||||||||||||||| ||||||||  |   | | || | ||  || || || |  |    | ||  ||    | |||||  |||   | || |  ||||                    
GCATTAATTGCACAGTTTTGGAGAGAAACAAGGCATTTTCAAAATATCCACAAGCACACTTCATCAACAATCGATCCATGGAGgttaaaaacat-attttgataaatgattttatttccaaaaaatcattgtgatttattttaatcagtggtgccattttag------------------

upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S256_50V6.1 (Physcomitrella patens), 5'ss of exon 2
GGGTCAAATGCGCAGTTTTGGAGAAAAGCAAAACTTTTTCTAAACATCCACAGGCGCACTTCATCAACAATCGATCTATGGAGgta---gatttcgttatctggaagaaggaattaaactattcagaagaatgcaaacttattaaaatgttt-agttctcttttgatctagtgttctctttcag------------------------------------------------------------------
| ||    | |    |  |||| ||  | |||   ||  |  | ||||| ||||| |||||| ||||||||||| |||||||||||     | || | || ||   | |   |  || |||    | |   |  | |   ||| || ||||  | |  |    ||||  | || |    |   |                                                                  
GTGTGCCTTCCCTGCTCGTGGACAAGCGGAAACGATTGCCGGAGCATCCGCAGGCTCACTTCCTCAACAATCGAACTATGGAGgtatccattgtcataatttgtctgcattgagcaacctacgacggacggt-tagagaaattgaagtgttcgaatggtggaatgatggaatgatgaaatgatgtcgagtacaaagagtcacggtagtcttgttttgttatgataaagcaaacatttgggcttcatgcag