Sequence
atgc intronic sequence ATGC exonic sequenceAACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g39010.1 (Oryza sativa), 5'ss of exon 3
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
|| || ||||| |||||||| || |||||||| |||| ||||| |||||||| | ||||||||||||||||||| || | ||||| |||| |||||| | | || ||| || | | | || ||| || || | ||| | || |||||||||| | |
TACTGCTATTGATATGTGGTCATTGGGTTGCATTATGGGAGAACTCTTATCAAAAGGGCCACTGTTCAATGGGAAAAGCGAGATAGATCAACTTGATAAGgta-tatggtt--ttgacttttgtctattccatatctttatt---------------ttgattaaggaaatct---tatgatgaagtgatttccattgcag---------------------------------
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G115755_T01 (Zea mays), 5'ss of exon 3
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccct-actgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
|| || || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||| |||||| |||| | ||||| |||| |||||| | || | | | | ||| || | | | | || | | | || | | |||| ||| |
GACTGCTATCGATATGTGGTCATTAGGTTGCATAATGGCAGAACTCTTGTCAAAAGAGCCACTCTTCACTGGGAAGTCTGAGATAGATCAACTTGATAAGgtatatggacatatgatgtatgatctactatattttgtttgttatataactacactgaattctaatggcagttaacttctactatag------------------------------------------------
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 2
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgc-tgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
|||||| |||||||||||||| |||||||| ||||||||||| || || || |||||||||||||| ||||||| ||| || ||||||| ||||||||||| | | | || || || ||||| ||| ||| | | | | || | | | | | | | | | | || || | || | | | | ||| ||
AACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCACTGTTTAATGGGAGAACAGAGTTTGATCAACTTGACAAGgtatgtgtaattttt--ttttaatttttgata-attcttgctatcatatttctctttccttttaaccttttggtgtcttgtgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtag
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 5
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattac-cattattgctgcccccctactgcctatatgatt--ctacttgatatatggtgatttccagtttaat-tcattctgtatgaggaatatctatgattgcag
|||||| |||||||||||||| |||||||| ||||||||||| || || || ||||| ||||| || ||||||||||| || ||||||| ||||||||||| | | | || | | |||| | ||| | | || | | ||| | || || | || || | ||||| | || | | | | | | ||||| || |
AACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAGCCACTATTTAATGGGAAAACAGAGTTTGATCAACTTGACAAGgtatgtgtaatgtttggtacattcttgcttcatatttctctttccttttaaccctttggtgtcttt-tgcttaaccacttggtggttgttttacactattgacctgttattctacttgtag-----------------
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 4
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgta-acttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
|||||| |||||||||||||| | ||||| ||||||||||| || || || |||||||||||||| ||||||| |||||| |||| || ||||||||||| | | | | | || |||||
AACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTGTTTAATGGGAGGACTGAATTTGAACAACTTGACAAGgtatgcattaaca-ccattttagacttgtag--------------------------------------------------------------------------------------------------------
upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 2
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
|||||| |||||||||||||| | ||||| ||||||||||| || || || |||||||| || || |||||||| |||||| |||| || ||||||||||| | | || ||||| | || | || ||||| | | | | | | || ||| | | ||| | || | ||| | | ||| | || || ||||||
AACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCTCTATTTAATGGGAAGACTGAATTTGAACAACTTGACAAGgtatgcattaacgccattttagacttgtagtggataa--gttcttgctctcactttggt-ctttcatcattttgtgcctcttcaagtggcgt--aggtctattaacatt-tatta-----atttac--ttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134929|gb|CB920267.1|CB920267EST: CAAAGGAGCCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAG ATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCC
genomic: CAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaac ... atgattgcagATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGgtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA