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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcctgtttattggtgttgatatttgcttctgacatgaaggtcagagaaatcagaagtgatggcttagcagattgccactttcatttttcttctgtaatgaaaccagacctcccacaaggtggctcatgaatgttttctgttggtttcgttcttatattctacag

Basic information

species Vitis vinifera
transcript Vv01s0010g02200.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G01460.2 (Glycine max), 5'ss of exon 3
CTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcctgtttattggtgttgatatttgcttctgacatgaaggtcagagaaatcagaagtgatggcttagcagattgccactttcatttttcttctgtaatgaaaccagacctcccacaaggtggctcatgaatgttttctgttggtttcgttcttatattctacag
                                                     || | ||||  | ||||||||| |||||||||||||| |||||||||||   |  || | ||||  ||||  | |||     | | |  ||   |  | | |  | |  || | | ||    | ||     | |   | |  |  | ||   ||                                                               
-----------------------------------------------------GCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatt--tgttactgttt-tggataataataatacct-atagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag--------------------------------------------------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G01460.1 (Glycine max), 5'ss of exon 2
CTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcctgtttattggtgttgatatttgcttctgacatgaaggtcagagaaatcagaagtgatggcttagcagattgccactttcatttttcttctgtaatgaaaccagacctcccacaaggtggctcatgaatgttttctgttggtttcgttcttatattctacag
|||||| ||  ||||  |||| || || || |||||||||||||| ||  |  || | ||||  | ||||||||| |||||||||||||| |||||||||||   |  || | ||||  ||||  | |||     | | |  ||   |  | | |  | |  || | | ||    | ||     | |   | |  |  | ||   ||                                                               
CTTGGCTCCCCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatt--tgttactgttt-tggataataataatacct-atagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134955|gb|CB920293.1|CB920293
EST:     CGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAG                         GTATACACAGATGGGAGGCCGAATATATCTGCACATGGAAGGAAGGCAACT
genomic: CGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcct ... tattctacagGTATACACAGATGGGAGGCCGAATATATCTGCACATGGAAGGAAGGCAACT