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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g01740.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgt----ttgtatctaa---gttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
||  || |  |  | ||  | |  || || ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| |||      | || |     | |   | | | ||  || ||||| |  || | || |  ||    |  | | || | ||| |||  | |       ||
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtt-tgatttggtggac-tgatcaatgtaaatgctctattcctgctcatag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 2
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgt----ttgtatctaa---gttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
|| ||| |  |  | ||  | |  || || ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| || |||      | || |     | |   ||| | ||  || ||||| |  || |||| |  ||    |  |   ||   ||| |||  | |     ||||
GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtt-taatttggtggac-tgatcgatgtgaatgctctattcctgctcgcag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 3
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgt----ttgtatctaagt---tcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
|| ||| |  |  | ||  | |  || || ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| || |||      | || |  ||   |   | | | ||  || ||||| |  || | || |  ||    |  |   ||   ||| |||  | |     ||||
GTCCAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagcatttgtgtcgcttgcattacttagcttctgctaggtgtt-tgatttggtggac-tgatcgatgtgaatgctctatttctgctcgcag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtat-ttttattgaatatggtctcatgcgttctgcag
 ||||| ||||  | |||||||||||||| ||||| ||||| ||||| ||||||||||| || || |||||||||||| |||| || || |||  || | |  ||   |  ||  |  ||         |||| |    |||||||||| |||| |||| |      || |    | || ||
ATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAGgtgggtttgtttgtctcttgttagttttt---------gattttg---ttttgtgtatcttttgttgattggctcgtcttcttctttgtag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
 ||||||| ||  | |||||||||||||| || || ||||||||||| ||||| ||||| || ||||||||||||||| | || ||||| |||| || |    | |    |||   | || ||| | |  ||  | ||   |||  |  |||   | |        || ||  |   | ||
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgtt---gctgcggattttgatttcgtg-tgttcatgttgattgattgattgatttggctca--------tcttgtatctggtag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ30530 (Selaginella moellendorffii), 5'ss of exon 2
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
 | |||||  | |||||  |  |  | ||||| |||||||| ||||| ||||||||||| ||||| || || |||||||| || ||||| |||  |  |||          | ||| ||| |   | ||||||  |    || |  |  |                               
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattct----------tccat-cttagaattttggattg-atctcttcgcttgctag-----------------------------

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag
 | |||||  | |||||  |  |  | ||||| |||||||| ||||||||||||||||| ||||| || || |||||||| || ||||| |||  |  |||          | ||| ||| |  || ||||||  |    || || |  |                               
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattct----------tccat-cttagaactttggattg-atctcttcgtttgctag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816624|gb|FQ399613.1|FQ399613
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|349823327|gb|FQ402526.1|FQ402526
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|161718299|gb|FC064760.1|FC064760
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|294965642|gb|GW837241.1|GW837241
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCCCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|349809177|gb|FQ398950.1|FQ398950
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG