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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag

Basic information

species Vitis vinifera
transcript Vv01s0010g01110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g37080.2 (Oryza sativa), 5'ss of exon 2
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgtta--aattctggcttttgtgttagcttaac--tttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag
|| || || | || || || ||| ||||||||||||| || ||||| |||||||| ||||| || |||||| | || || |||||||||||| |||| ||||||       || |      | || |  ||||   ||| |||  | ||||     | ||||     ||||  |||| || ||| ||                                                          
TTTTATCTTTGTCAGTTACATATAATGAGCCTTGGTTCACAAACACTAAATATTTCTGGGTTGGACCTGGTGACCAGGTTTGGCCTGACCAAAAGATAAAgtaa------tacgaattggtcctttattgcttcatgttcttactagttctcaggctggtgtatatctaacaattttccccttatctacag------------------------------------------------------

upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G444643_T01 (Zea mays), 5'ss of exon 3
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag
|| || || | ||||| || ||| ||||||||||||| || || || | ||||||||||||||| || ||  | || ||||||||||||||| |||| ||||||  || | |    || | || |  |   || || | |  |||||||   |  |      |||    |   ||   | | ||  |  | | |  |||||                                        
TTTTATCTTTGTCTGTCACATATAATGAGCCTTGGTTCACCAATACCAGATATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAAgtaa--ttcttat---ccttccactgtactttt-tgatag--aaattcttaatgcttctcaggctggtataaatctaatggttgcacccttact--ctcag----------------------------------------

upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 2
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag
| ||  | ||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||| |||| |||||| | ||  |||||||||| ||| |||| |||||||       || | | |   ||    |||  |     |||  ||    |      |       | |||   | ||    | | |||     ||                                             
TGCTTTCACTATCTGTAACATACAATGAGCCATGGTTTAAGAACACAAGATACTTTTGGATAGGCCCTGGTGACCAGATCTGGCCTGATCAAAAGATAAAgtaagaaa---gcatgtcttctctt----gctcttccaaattatgtttc--cccccaagaagatccatcttcaacgttccattttccttcttccag---------------------------------------------

upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G14060.1 (Glycine max), 5'ss of exon 3
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcaca-agccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag
|| | ||| |  | | ||| ||||||||||||||||||||| | ||||  || |||||||| ||||| || |||||  | ||||| || ||| |||||||||||| ||||||   |     ||||  |    || ||| | ||   ||      |||    |||                                                                              
TTTTTGCTTTGGCAGCAACATATGATGAGCCTTGGTTTACTGATACAAGGTACTTTTGGGTGGGGCCAGGGAATCAGATATGGCCAGATCAAAAGATTAAgtaagattttcatttacttgcacatcta----ttgtggcttttctgttacaatctttaatctag------------------------------------------------------------------------------

upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G14040.1 (Glycine max), 5'ss of exon 2
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttca----caagccatacattaaaagcttatggttgttaaattctggctt--ttgtgttagcttaactttttcctttagctgtgctttgaata-gctcagcctatga-agtcagttgagtgatgatatattgcaaattcag
|| | ||| |  | ||||| |||||||| |||||||||||| | ||||  || |||||||| ||||| || |||||  | ||||| || ||| |||||||||||| ||||||    |  ||   || ||    |||| |   |   ||  | |    |  || |||||  |    || ||  |    || || |||  ||  | ||| | || |   ||   |||||  || |  | ||   | |||||
TTTTTGCTTTGGCAGTAACATATGATGAACCTTGGTTTACTGATACAAGGTACTTTTGGGTGGGGCCAGGGAATCAGATATGGCCAGATCAAAAGATTAAgtaagattttcatttacttgcacaacttttgtggcttttctgttacaatctttaatctagttttgttaattgtctttatttgtccttctttgatttccatgtgttcaacttaagttggttgattgagcaataaccttttaacatttcag

upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 2
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgttaaattctggcttttgtgttagcttaactttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag
|||| ||| ||||||| |||||  |||||||||||||||  ||||| ||||| |||||||||||||||||  ||||    |||||||| ||||| |  |||||||  | |  |   | |  | |||     || |   |    |||||| | ||||||| | |||  || |  |  | || ||   ||      ||                                             
TTCTTGCTTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCCTGGAGATCAGACTTGGCCTGATCAACAAACAAAgtaagagtgttgct--caaggccttac---tttgtatataaagaattctcgattttgtgcttgctctacatgata-tatatctactctc-atgcag---------------------------------------------