Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctctgttcctctctttctttctctcagacactggtcaaatttaaatgcatattcaaggtggataacggtgtttatactattgggacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G05140.1 (Glycine max), 5'ss of exon 3
GTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagct---------ctctgttcctctctttct-----ttctctca-gacactggtcaaatttaaatgcatattcaaggtggataacggtgttta-tactattgggacag
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GTTAAAATACTATGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAGAATTAGAAAAGCTgtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttacgattttgctatagttttggctactttttaa--tgactaactctttctaatattgttag-----
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G23250.1 (Glycine max), 5'ss of exon 3
GTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctctgt-tcctctctttct-ttctctcagacactggtcaa--atttaaatgcatattcaaggtggataacggtgtttatactattgggacag------
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GTTAAAATTCTGTGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctata-gttttggctgctttttaatgactgactctttctaatattgttag
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G35930.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctctgttcctctcttt--ctttctctcagacactggtcaaatt--taaatgcatattcaaggtggataacggtgtttatactatt----gggacag
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GTTAAAATAGTTTGTCATCTGCACCATGACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCCgtatgttcttctttcccctgtttaagtttgcatccataaaagctcaattttttgcagttttacttgatgtgtattaatctgttttgacttttctttgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30305130|gb|CB981924.1|CB981924EST: TGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA GTTTTGCTTGCTAGGCAATTCCACTTCAATTACACAACCCCTGACCGCTCA
genomic: TGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctc ... attgggacagGTTTTGCTTGCTAGGCAATTCCACTTCAATTACACAACCCCTGACCGCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctctgttcctctctttctttctctcagacactggtcaaatttaaatgcatattcaaggtggataacggtgtttatactattgggacag
- - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT