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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatattttctcttagctttctgcttattgtttgaaaaattttaattatttgaagaagtttaattaattcatgtaaaaaattcccaaaaaagaact...

Basic information

species Vitis vinifera
transcript Vv00s2288g00010.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77589188|gb|DV223856.1|DV223856
EST:     GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGT                         AAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
genomic: GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatat ... tcttttccagAAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
EST: gi|71882487|gb|DT031542.1|DT031542
EST:     GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGT                         AAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
genomic: GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatat ... tcttttccagAAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
EST: gi|71888942|gb|DT037997.1|DT037997
EST:     GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGT                         AAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
genomic: GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatat ... tcttttccagAAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
EST: gi|71884759|gb|DT033814.1|DT033814
EST:     GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGT                         AAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
genomic: GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatat ... tcttttccagAAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
EST: gi|110429599|gb|EC996095.1|EC996095
EST:     GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGT                         AAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG
genomic: GGTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatat ... tcttttccagAAATCATCAAAGCCCAAAACTAGAACTGCCCGGCGTTAGTTACAATGTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGCAACAGGTTCAGGGGCAAGCTTTGGGGCTGCAAGTgtgagtatattttctcttagctttctgcttattgtttgaaaaattttaattatttgaagaagtttaattaattcatgtaaaaaattcccaaaaaagaact

 TGCTGC
- - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa