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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAGgcaaacatctctctccttcgctagatatgcataataatgatttttttcttctttcttttgaagttggaattgtatcttgttcagagttgacgtagtcgtgtggtgaatgttatgattttcttttggagttccag

Basic information

species Vitis vinifera
transcript Vv00s2207g00010.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s2207g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 2
AGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAGgcaaacatctctctccttcgctagatatgcataataatgatttttttcttctttcttttgaagttggaattgtatcttgttcagagttgacgtagtcgtgtggtgaatgttatgattttcttttggagttccag
| ||| |||||| |||| ||||||||||||||| | ||||||||||  ||||||||        | | |  |||| ||       || | | |  ||    |    | |  | | |  | ||  ||   ||| | | |   ||                                              
AATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGgt-------tttttaattcgtta--cgctaatcaaattagttaacatgcattgtactataatctcggtttt---tctcggttaa--ttag--------------------------------------------