Sequence
atgc intronic sequence ATGC exonic sequenceAAGATTGGCTGCTTTGACCACCTTGTATCCTAATTTGGTTACTAAAGAGAACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgtaataactcatctttatttaatggatatttttaaacaagagctggtttctgcatttgctgcacacttctgggttctcattctcactcaagcttaattaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2006g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G39330.1 (Glycine max), 5'ss of exon 6
AAGATTGGCTGCTTTGACCACCTTGTATCCTAATTTGGTTACTAAAGAGAACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgta-ataactcatct--ttatttaatggatatttttaaacaagagctggtttctgcatttgctgc-acacttctgggttct---cattctcactcaagcttaattaa
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AAGATTGGTTGCTTTGACCAACTTGTACCCTAAATTAGTCACCAAAGAGAACTTGCTTTCTTCATCTGAACTTGAACCTTTTGCTAATTATTCCTCTCAGgtttgttgctaacttgctaatttcattcttgtttcatttacattgatgatttttacaagtctaattatattccttgttacaagaaattttgttttgtgct-------
upper sequence: Vv00s2006g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G01390.1 (Glycine max), 5'ss of exon 7
AAGATTGGCTGCTTTGACCACCTTGTATCCTAATTTGGTTACTAAAGAGAACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgta-ataactcatct--ttatttaatggatatttttaaacaagagctggtttctgcatttgctgc-acacttctgggttct---cattctcactcaagcttaattaa
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ACGATTGGTTGCTTTGACCAATTTGTACCCTAAATTAGTCACCAAAGAGAACTTGCTTTCTTCAGCTGAACTCAAATCTTTTGCTAATTATTCCTCTCAGgtttgttgctaacttgctaatttcattcttgtttcatttacattgatgatttttacaagtctaattatattcctagttacaagaaattttgttttgtgct-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690821|gb|EC959957.1|EC959957EST: ACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATTTCAG CTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATT
genomic: ACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgtaataactc ... tttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGATTGGCTGCTTTGACCACCTTGTATCCTAATTTGGTTACTAAAGAGAACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgtaataactcatctttatttaatggatatttttaaacaagagctggtttctgcatttgctgcacacttctgggttctcattctcactcaagcttaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcactc