1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaactatatgagagtgtgatgtgatgaaattttaagggtgtctgagggaatattcttcatgcaataatgacttgtaaatagaccttaagaataa...
species | Vitis vinifera |
transcript | Vv00s1455g00010.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|32248045|gb|CD713864.1|CD713864
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|110390335|gb|EC955237.1|EC955237
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|30328122|gb|CD011384.1|CD011384
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|32265245|gb|CD716834.1|CD716834
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|32271290|gb|CD720449.1|CD720449
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|32247387|gb|CD713206.1|CD713206
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|32249570|gb|CD715389.1|CD715389
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTGEST: gi|110357223|gb|EC920610.1|EC920610
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
EST: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAG GTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
genomic: CAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaac ... gataattcagGTTAGGTGCAAGGTACCAAACCTTTGTGCAGATAATGGGATGAAGGTAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaactatatgagagtgtgatgtgatgaaattttaagggtgtctgagggaatattcttcatgcaataatgacttgtaaatagaccttaagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaata