1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCGTTTTTGCATTTCTTGATTCTCATCATCCAGACATTCCGGAGCCCCCATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAGgtactttctctattttatcttagctacagatgactttttatttatttattatttttttttcggactgtggtgaattatactaatatttgatttgtgtacatcattgtcttctctaatgttggattccctttataatccacag
species | Vitis vinifera |
transcript | Vv00s1364g00010.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAG CGCTGCAGTGGTTGGAGAACGAACCAAATGTAACAATTAGATGCAAAGATTEST: gi|110379917|gb|EC945142.1|EC945142
genomic: ATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAGgtactttctc ... taatccacagCGCTGCAGTGGTTGGAGAACGAACCAAATGTAACAATTAGATGCAAAGATT
EST: ATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAG CGCTGCAGTGGTTGGAGAACGAACCAAATGTAACAATTAGATGCAAAGATT
genomic: ATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAGgtactttctc ... taatccacagCGCTGCAGTGGTTGGAGAACGAACCAAATGTAACAATTAGATGCAAAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGTTTTTGCATTTCTTGATTCTCATCATCCAGACATTCCGGAGCCCCCATACCCTCCTCATTGTATAGCTGGAACAGATGAATCCAAATTGGTACCAGgtactttctctattttatcttagctacagatgactttttatttatttattatttttttttcggactgtggtgaattatactaatatttgatttgtgtacatcattgtcttctctaatgttggattccctttataatccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG