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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag

Basic information

species Vitis vinifera
transcript Vv00s1338g00020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctgg---ttctttttctgggattttttttaat-taatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | ||||||||| |||||||| || ||  | ||||||||||| |||||||| |||||  | || ||||| |||||||| ||||| || || |||||||||| |||||||     |||||| |||   ||| ||  | || | |  | |  ||   ||  | |                                                                                                                              
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttaaatttctttatcttacattcttactgatgtgacattttgttac-aatttag------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 3
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | ||||||||| |||||||| || ||| | ||||||||||| |||||||| |||||  | || ||||| |||||||| || || || || |||||||||| ||||  | |  |||| |      || | | |  || |  | |  | || ||| ||    | ||   |||   ||    | |||                                                                                                   
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGTTCTGGCATTTCTCTCTTTATTGCTACCAATATCTGgtgagcacattgaactttgttc----ttctctattgttgacattttctattcaacttg----acttatggaaatctttctctgtag---------------------------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 2
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatc-tggttctttttctgggatttttttta-attaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | ||||||||| |||||||| || ||| | ||||||||||| |||||||| |||||  | || ||||| |||||  | || || || || |||||||||| |||||| |     | |||||     |  | | | |||   |    |||| |                                                                                                                                     
TTTTCTTTGCTGGCATCATTGTCATCTGTCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCATTGTTTATTGCTACCAATATCTGgtaagcatcctaaacttctttctcttgctgatgtgacattttgtcgcaatttag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 2
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttga-agaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | ||||||||| |||||||| || ||| | ||||||||||| |||||||| |||||| | || ||||| |||||||| ||||| || || |||||||||| ||||||| |  |||  ||      |||| || ||    |  |  | ||| || |  |   | | | |  |  | | || | |||                                                                                                   
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttggacttaatcc-----ttttattgatgtgct-gttctgttgcacttaaagcttataataagaattctttcatgtag---------------------------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G130987_T02 (Zea mays), 5'ss of exon 3
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcat-ctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | ||||||||| |||||||| || ||||| ||||||||||| |||||||| |||||  | || ||||| |||||||| ||||| || || |||||||||| |||||  ||| | |  | ||    ||| ||    || || |  ||||      |||   | ||  |   ||  ||||  |    | ||     | | |                                                                                     
TTTTCTTTGCTGGCATCATTGTCATCTGTTTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgttggatttaatcct----tttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtag-------------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
| | |||||||||||||||||| || ||| |||||||||| || |||||||| |||||  | || ||||| || ||||| ||||| || || |||||||||| ||||| |        |  | ||   ||   ||  | | ||   |   |   | |    | | ||   ||| ||  |  |  |    | |    ||                                                                                       
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttgg---ttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaatt-cgaactactaacctt---------------------------------------------------------------------------------

upper sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 2
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag
                                                                                   || |     || |  || || | |||| | ||  | |  ||||   | |   ||  || |    | | |||  |    || |  |||     ||        | |  |  |      |  |     |  |  || | ||   | | ||||   ||  ||||   |  |  | | ||   |||  |||               
---------------------------------------------------------------------------------GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCAT--ATGTCCTGTCTGGAATGTATGGTAGTgtaagccaacttggaacagggaatgctattctcattatacttcag--cttttctttgctggcatcattg--tcatctgtttggatg-aacttctccagaaaggtt---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351028747|gb|FQ433177.1|FQ433177
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCC-ACCACTATTAATAGTGGTCG
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
EST: gi|349832293|gb|FQ420854.1|FQ420854
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
EST: gi|110718605|gb|EE095630.1|EE095630
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCAC-ACTATTAATAATGGTCC
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
EST: gi|110689014|gb|EE067912.1|EE067912
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCA-CTAATATCTG                         TGAAAACATCATCTGGAANGGCTTTTAGCCCCACCACTATTAATAGTGGTC
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAA-GGCTTTTAGCCCCACCACTATTAATAGTGGTC
EST: gi|110701078|gb|EE078295.1|EE078295
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCC-CCACTATTAATAGTGGTCG
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
EST: gi|161717695|gb|FC067907.1|FC067907
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTATCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTATAGCCCCACCACTATTAATAGTGGTC
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTC
EST: gi|34549670|gb|CF517902.1|CF517902
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGGCG
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
EST: gi|161718391|gb|FC067285.1|FC067285
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG
genomic: GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCG