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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGCTTCTTAGATGAGATTCCTAGATCCAATTTGGAACAGTTAGAGGCTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactgtagctcctttaacattccctaacccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcag

Basic information

species Vitis vinifera
transcript Vv00s0642g00010.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429905|gb|EC996419.1|EC996419
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|110394654|gb|EC959869.1|EC959869
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|30329949|gb|CD013211.1|CD013211
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|349821463|gb|FQ411084.1|FQ411084
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|46918566|gb|CN547895.1|CN547895
EST:     GCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAGATTACACTTGATATTTTCCGCGACCCA
genomic: GCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|110394861|gb|EC960232.1|EC960232
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
EST: gi|77578487|gb|DV218036.1|DV218036
EST:     CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGAT                         GTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT
genomic: CTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactg ... agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGGCTTCTTAGATGAGATTCCTAGATCCAATTTGGAACAGTTAGAGGCTCTAGACCGAGTGTTCAGAATAGCTGCAGAAGCTGACTTACCGACTGATgtgagtactgtagctcctttaacattccctaacccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA