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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAGgtgaacaaagttaatatttttttactctcgtttctgcacatgaatttatcaaactatagttatctaattccttaggatgctcttttgcttcattatttga...

Basic information

species Vitis vinifera
transcript Vv00s0611g00010.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 5'ss of exon 12
GCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAGgtgaacaaagttaatatttttttactc--tcgtttctgcacatgaatttatcaaactatagttatctaattccttaggatgctcttttgcttcattatttga
||| ||||| |||||||||||||| || ||  | ||||| || |||||||| ||||||||||||||||||||||||||    |   ||   |    | ||  |       |  | ||    || | |   ||| ||||   |  ||   ||  |   |    |||| |   ||  || 
GCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACTGGGAACTCTAAAGGATATGGTTTCTGTGTTTATCAGgtattaatgcttcggacacatgtagccaacaaactacgtactgacatgtgttgtactgtagtacac--atgtgttgaggaacatgcttgcctgtctacgtgt

upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 5'ss of exon 13
GCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAGgtgaacaaagttaatatttttttactctcgtttctgcacatgaatttatcaaactatagttatc--taattccttaggatgctcttttgcttcattatttga
||| ||||| |||||||||||||| || ||  | |||||||| |||||||| ||||||||||||||||| ||||||||   ||   ||   |  |  ||    |      |||   |   |  |      |||  | |    |||| | |   ||    |||  |  |||    ||  
GCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACAGGCAACTCTAAAGGATATGGTTTCTGTGTATATCAGgtatgcatgcttcggacatagttgaattttacattgcctttagctgaactgttttatgctgaagaataatgcgtgttgacag-cttgagagtcagaccttc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189838|gb|CF609187.1|CF609187
EST:     GAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG                         GATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATG
genomic: GAAACTCTAAGGGATATGGTTTCTGTGTTTATCAGgtgaacaaag ... tgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATG