Sequence
atgc intronic sequence ATGC exonic sequenceTTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 5'ss of exon 2
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaacttt-aatattt-atttagtatttgtttttgttttttgtttttcctctaacag
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CAGTTCCAAAAGTTGATGCACCCTCAATGGCTGGTCAGTGGCAAAAAGGAAAGCTCATTGGCAGTGGAACATTTGGATGTGTATATGAGGCCGCCAATAGgtatgcaaatgcattttatatagcattatgtttgctggatcatcttaaagtttgaacatttcatctggcatctaacgtacag--------------------
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 4
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtat----gtgaatttgacatattcattctgttaatgtctctgttacagtaaac--tttaatatttatttagtatttgtttttg-ttttttgtttttcctctaacag
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CTGTGGCTAAGACTGAATCCTTGCCCATGAAAAACCAGTGGCAAAAAGGAAAACTTCTTGGTCGTGGTACTTTTGGAACTGTTTATGTTGCCACCAACAGgtatatctgtggttctagtgctacatttttcataagcattattttaagctcttccattctctctttcttcgaagctcgtctaaaacatattgttgttcctc--atag
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 1
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacag
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CCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaatgtttcgtgagtatttta--agatcttctgttgtc-tcttttctaaggctc-tgaaacagatgctgcttcttgacag--------------
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 5
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgac--atattcattctgttaatgtctctgttacagtaaactttaatattt---atttagtatttgtttttgttttttgtttttcctctaacag
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CCTTGGCTAAGACTGAACCCATGCCCATGAAAAACCAGTGGCAAAAAGGGAAACTTCTTGGCCGTGGTACTTTTGGAACTGTTTATGCTGCCACCAATAGgtatgctatgttatctagtacaagtttcataagcattaatgctatttccattctctctttcttggaattgaagctcatttaggactccttttttttc-ctcacag
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G20460.1 (Glycine max), 5'ss of exon 3
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacag
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CCATGGTTAAGTCAGAATCGCTGCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgttcgtaaatgtttcatgagtatttta--agatcttctgttgtcttt--tttctaaggctctgaaacagatgttgcttcttgacag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689010|gb|EE067915.1|EE067915EST: AAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCG AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGA
genomic: AAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaat ... cctctaacagAGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG