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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACGATGGACGCATTACTGGAAATGATGCCACAAAGTTCTTCGCAATGTCCAACCTTTCCCGTTCGGAACTCAAACAGgttcttttctccagttttgttttattttattttttgcttcgaatatatatatttaatatcggcattttattgctttcaaataggtgactggagcttttga...

Basic information

species Vitis vinifera
transcript Vv00s0516g00020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAACGATGGACGCATTACTGGAAATGATGCCACAAAGTTCTTCGCAATGTCCAACCTTTCCCGTTCGGAACTCAAACAGgttcttttctcca--------gttttgt----tttattttattttttgcttcgaatatatatatttaatatcggcattttattgc-tttcaaatag-gtga-ctggagct--tttga-----------------------
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ATGGAGATGGTCGTGTTTCGGGTAACGATGCTACAAAGTTCTTCGCGATGTCAAAGCTTTCTCGCCAGGAACTCAAACAGgttattattcatataatcgacgattcgtgaaatatataggctatttggtttaaaattgaactttctgagttcatgaatccatggaatttgtaacagtgtaatctagggttgattggaattagttggattttggtttgtag