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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGATAATTGTGATGAAGTGGGGTGGTATATTCTTGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCGgtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatatattcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacag

Basic information

species Vitis vinifera
transcript Vv00s0499g00010.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G16260.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGTGGATAATTG----TGATGAAGTGGGGTGGTATATTCTTGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCGgtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatat-attcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacag
  |   | | |||    |  ||| || || ||||| ||||||||||||||||| ||||| || ||||||||| | || || ||| |  |  |||||||      || ||||  |||  |     || |  |  |    ||   | |   |||  |   ||| || | |||  |||    |||  |      |  |  |                                                                                     
-GGGCAACAGTTGCAGCTACTGATGTTGGTTGGTACATTCTTGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTAgtaagtg------ttcatgttaacagattcc--ttgttctagtaaggtttata-agaaatacgagctattaagcgctgtactttacttgtttgctttgattgggcag-------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964672|gb|GW838475.1|GW838475
EST:     TGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCG                         AGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGCCTGAGG
genomic: TGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCGgtaagtgaat ... gcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGG