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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcag

Basic information

species Vitis vinifera
transcript Vv00s0475g00050.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G02050.1 (Glycine max), 5'ss of exon 9
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcag
|||||||| || ||||| ||||||| | ||||||| |||| || ||| ||| |||||||||| || |||||||||||  |||| |   | || ||| ||||||| | |||  |      |||  || |   |    ||   |  |  ||||  | |   | | | |  ||||| | || | |  | | ||  || || ||
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGGTAATGATGACCAATTCATTCAGCCTCACCACTCTGATCTCATCTCTGAATCATATGCGgtattctttcaaaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaa-atctgtag

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 9
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagatttt---aaagcgag--gcattgcaattggcgtctttatgaaaat--tttaccatattgtttattatgtgcag
|||||||| || ||||| ||||||| | ||||||| ||||| |  || |||||||||||||| || ||||| |||||  |||| |   |  ||||| | ||||||    ||||   |    |     | | |||||   ||||| |   |||      ||    |  |    |||||   | | |||  | | |  | | || ||
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G00770.1 (Glycine max), 5'ss of exon 9
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcag
|||||||| || ||||| ||||||| | ||||||| ||||| |  || |||||||||||||| || ||||| |||||  |||| |   |  ||||| | ||||||  | ||||   |      |     |  |||| ||   |  |    |  ||      ||  |    |   |||| |||| ||| || | || ||
GTTGCACCAAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatttattccaaatttggagaatgaaattttttaaagcaatctgcaccctttttccattggtagccaaaatacc-tattcttttttttttgtag

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G12950.1 (Glycine max), 5'ss of exon 7
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcag
|||||||| || ||||| ||||||| | || |||| |||| || ||| ||| |||||||||| || |||||||||||  |||| |   | || ||| ||||||| | |||  |       ||  || |   |    ||   |  |  ||||| | |   | | | |  ||||| | || | |  | | ||  || || ||
GTTGCACCGAAGACATTCATTCCTGTTTTACTTGGACATGGTAATGATGACCAATTCATTCAGCCTCACCACTCTGATCTCATCTCTGAATCATATGCGgtattctttcaaaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaa-atttgtag

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 8
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgta-ttatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcag
||| | || || || |||||||| ||| ||||||| ||||| |  |  ||||||||||| ||||| || ||||||||| ||||| |||||| |||| ||||| |||  | |||           | ||||    ||||     | ||||  ||||   | | || ||    || |  | || || |  |  || |||||
GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataatt-----------gcggtt----tttatgttcaagcatatcaatc--ctttttcatttttatgtacctatcttctggaa-atttgcag