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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttctgtattcgtggtttcatgcatttgagtttccctttggttattttttgctgttctctgtttggttgacgtgaaaagggaggaaagcagaagg...

Basic information

species Vitis vinifera
transcript Vv00s0357g00020.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404694|gb|CF210321.1|CF210321
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|30256504|gb|CB972347.1|CB972347
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|110387242|gb|EC951896.1|EC951896
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|26267567|gb|CA818630.1|CA818630
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTGCCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|22011635|gb|BQ796669.1|BQ796669
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|30256224|gb|CB972067.1|CB972067
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
EST: gi|34547229|gb|CF515461.1|CF515461
EST:     TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTCCCGCACAG                         GTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC
genomic: TTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttct ... tgtatctcagGTTTCCGTTTCTTTTAGTGGATAGAGTGATTGAATACAACCCAGGGATCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAGgtgagtttctgtattcgtggtttcatgcatttgagtttccctttggttattttttgctgttctctgtttggttgacgtgaaaagggaggaaagcagaagg

- - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaag