1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCAAGAAGGCTGAGTCTGATTATTCAGATGCCAATAGTGATAAAGAATATTCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAGCTTCAAGgttggttttcctttctttatttcctttttggtaaatgaatataaatgtaaatcattgctccagaatgtatattcattatgttatggtactgccacctata...
species | Vitis vinifera |
transcript | Vv00s0349g00020.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAACTTCAAG AAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTCEST: gi|30129560|gb|CB914899.1|CB914899
genomic: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAGCTTCAAGgttggttttc ... ttttaagcagAAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTC
EST: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAACTTCAAG AAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTCEST: gi|30299868|gb|CB976662.1|CB976662
genomic: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAGCTTCAAGgttggttttc ... ttttaagcagAAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTC
EST: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAACTTCAAG AAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTC
genomic: TCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAGCTTCAAGgttggttttc ... ttttaagcagAAACATTTCTTCGGTATCATCGGGACATGATCTTCTGTCAACTAGAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGAAGGCTGAGTCTGATTATTCAGATGCCAATAGTGATAAAGAATATTCGGTTGATGAAAGCTATCCTAAGAGAAGTGATACTCGTACAGCTTCAAGgttggttttcctttctttatttcctttttggtaaatgaatataaatgtaaatcattgctccagaatgtatattcattatgttatggtactgccacctata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtaaa