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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATTCGAGTGTGAAGGGTGAGGTGTTTGTGTGCAAAAGgtaagttgattgctgattttcattcaattagattttccctttctatctgcaacccatcttcttccaatctcccaaactttgatttaatttgttattattatcattgatag

Basic information

species Vitis vinifera
transcript Vv00s0338g00020.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709929|gb|FC060568.1|FC060568
EST:     GAATTCGAGTGTGAAGGGTGAGGTGTTTGTGTGCAAAAG                         TTTGAAGATGGTATTCCTGCTCTGGTCTCGCCCTTCTCCCCAGAAACAGAA
genomic: GAATTCGAGTGTGAAGGGTGAGGTGTTTGTGTGCAAAAGgtaagttgat ... tcattgatagTTTGAAGATGGTATTCCTGCTCTGGTCTCGCCCTTCTCCTCAGAAACAGAA
EST: gi|110684603|gb|EE062070.1|EE062070
EST:     GTTGAATTCGAGTGTGAAGGGTGAGGTGTTTGTGTGCAAAAG                         TTTGAAGATGGTATTCCTGCTCTGGTCTCGCCCTTCTCCTCAGAAACAGAA
genomic: GTTGAATTCGAGTGTGAAGGGTGAGGTGTTTGTGTGCAAAAGgtaagttgat ... tcattgatagTTTGAAGATGGTATTCCTGCTCTGGTCTCGCCCTTCTCCTCAGAAACAGAA