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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATGCAGTTCTTGGAAGAATTGCTTCTACAGCACAAGAGTTGGCTCATTATCATTCAGGGGATGgtattgtattcctgtcttttctgtgcctttttgtgtatctttctttcccaacttgtctagtttaattggttgctacgttttgaaatgactaaatcttgtg...

Basic information

species Vitis vinifera
transcript Vv00s0333g00070.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0333g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g08730.1 (Oryza sativa), 5'ss of exon 5
ATGAATGCAGTTCTTGGAAGAATTGCTTCTACAGCACAAGAGTTGGCTCATTATCATTCAGGGGATGgtattgtattcctgtcttttctgtgcctttttgtgtatctttctttcccaacttgtctagtttaattggttgctacgtt-ttgaaatgacta---aatcttgtg
|||||||||||||| ||||||||  || ||||  | || || ||||| |||||||||||||| ||||||||     || |  | | |   |     ||    | | ||| |  |  |  |||   |   || |  |    ||   |  ||  || | ||   || | | | 
ATGAATGCAGTTCTCGGAAGAATCACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATGgtat---gctctttacctatagataatagttctgttgtttttttagcttattttgcagaaaatagtaagggagtattctactggtataattatacaaacatat-

upper sequence: Vv00s0333g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 5
ATGAATGCAGTTCTTGGAAGAATTGCTTCTACAGCACAAGAGTTGGCTCATTATCATTCAGGGGATGgtattgtattcctgtcttttctgtgcctttttgtgtatctttctttcccaacttgtcta-gtttaattggttgctacgttttg-aaatgactaaatcttgtg---
|||||||  ||||||| |||||||||||| ||||| || |||||||||||||| |||||||| ||||| | | | | | |  ||| | |   |  |    |||  ||| ||    | ||| || |   |  | ||  ||  |  | ||   || ||||  | |||       
ATGAATGGCGTTCTTGAAAGAATTGCTTCCACAGCGCATGAGTTGGCTCATTACCATTCAGGAGATGgcaatatttccttcccttgttt---ctctcggatgttacttcctcgttctactcgtttttatgaagttcatttttgtgattcacaagtgac--agtctgaaattt