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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGAGTTCAAGCGACGGCTCGAGAAGGACGCGGATGCTCGAGAGGCCTTCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataaatgggtcttctgttatgtacgtccatgctttggtatatgattttttttttttttacttttatttttatttttacatag

Basic information

species Vitis vinifera
transcript Vv00s0323g00040.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045677|gb|FQ440862.1|FQ440862
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGGGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|18458960|gb|BM437238.1|BM437238
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|28961923|gb|CB340981.1|CB340981
EST:     TCCAGCGCCATGTTC-TGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349812568|gb|FQ407187.1|FQ407187
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|352782030|gb|FQ469328.1|FQ469328
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351013034|gb|FQ433761.1|FQ433761
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|294966047|gb|GW837414.1|GW837414
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349818883|gb|FQ411578.1|FQ411578
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351024091|gb|FQ423514.1|FQ423514
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|28964858|gb|CB343891.1|CB343891
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349825131|gb|FQ415678.1|FQ415678
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|28964910|gb|CB343943.1|CB343943
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|110372937|gb|EC937134.1|EC937134
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351052007|gb|FQ450698.1|FQ450698
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351023061|gb|FQ430936.1|FQ430936
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351014068|gb|FQ434220.1|FQ434220
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351034821|gb|FQ458178.1|FQ458178
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349810037|gb|FQ398662.1|FQ398662
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349818743|gb|FQ409277.1|FQ409277
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349833110|gb|FQ416488.1|FQ416488
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|26261480|gb|CA812543.1|CA812543
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351035150|gb|FQ458507.1|FQ458507
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351044715|gb|FQ443246.1|FQ443246
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|110427789|gb|EC994240.1|EC994240
EST:     TCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351024906|gb|FQ433323.1|FQ433323
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351051811|gb|FQ455225.1|FQ455225
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCGGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|32248420|gb|CD714239.1|CD714239
EST:     GCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: GCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|32244984|gb|CD710803.1|CD710803
EST:     TGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349832594|gb|FQ421952.1|FQ421952
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351043470|gb|FQ428942.1|FQ428942
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349823321|gb|FQ402520.1|FQ402520
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351014302|gb|FQ437304.1|FQ437304
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|352769266|gb|FQ471415.1|FQ471415
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|110699852|gb|EE077230.1|EE077230
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351013822|gb|FQ433974.1|FQ433974
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351017299|gb|FQ435651.1|FQ435651
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351044247|gb|FQ447601.1|FQ447601
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|110684606|gb|EE062073.1|EE062073
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCNAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351025451|gb|FQ435143.1|FQ435143
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351040609|gb|FQ438153.1|FQ438153
EST:     TCCAGCGCCATGTTCTTGAGGAAA--GAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|351045771|gb|FQ440956.1|FQ440956
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349825132|gb|FQ415679.1|FQ415679
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|349830964|gb|FQ418248.1|FQ418248
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
EST: gi|18459240|gb|BM437518.1|BM437518
EST:     TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAG                         TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT
genomic: TCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataa ... ttttacatagTCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGGAGTTCAAGCGACGGCTCGAGAAGGACGCGGATGCTCGAGAGGCCTTCCAGCGCCATGTTCTTGAGGAAAAAGAGCGGCGCCAAGCTCTAAGGCAGgtgagaataaatgggtcttctgttatgtacgtccatgctttggtatatgattttttttttttttacttttatttttatttttacatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT