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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag

Basic information

species Vitis vinifera
transcript Vv00s0317g00020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag
|| ||||| |||||||| |||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||| | || || |   | || || |||||||||  | || ||    ||    | ||   |    | | | |  |||         | || ||   || |  | |   | |       |    |  ||||  |    
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtgttccttggcg-tgtgcgaaattcgggaaatatggat----

upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43720.1 (Glycine max), 5'ss of exon 2
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgtttgc---ctttc--gttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag
|| ||||| |||||||| |||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||| | || || |   | || || ||||| |||  | || ||    ||    | ||   |    | | | |  |||   | | |  | |||||    ||| |   || | ||||||    |    | ||||          
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacatgcaagatcacagtgttccttggcgt-gcaatattcaattcgggagatttg---------

upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G52240.1 (Glycine max), 5'ss of exon 2
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgt----ttgc-ctttcgttcacataactccgtacggtcgtaa--tatttttgtataaaaatttatgtgtgcag
|||||||| |||||||| |||| ||| ||||||   || ||||||||||||||||| |||||||| |||||| | || || |  ||||| || ||||| |||  | ||  ||   |      | || || || || | | |    |  | |  || ||   |  |   |||||   | |||     | |  | | |||||            
CACCTGATTGAGAAGTGTTTGACCTTTCACATGTCAAAGGAAGAGTGCATGGAAGCTCTCTCCAAGCATGCAAATATTAAGCCTGTCATAACATCCACTGgtatgttctcttctctttcattctaacctatccctgtttataaaataacacactccttagaaacaacacgtacacacataaacctctctcatgttaaaat------------

upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G10620.1 (Glycine max), 5'ss of exon 2
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatct--ctctctatgtgtt-tgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag
||| |||| |||||||| |||||||| ||||||   || ||||| ||||||||||| |||||||| |||||| | || || |  ||||| || ||||| |||  | ||  ||   |      | |||     |  |||    |  ||  | |     |    || || ||    |   | ||     |||  ||  |||         
CACATGATTGAGAAGTGTTTGATCTTTCACATGTCAAAGGAAGAATGCATGGAAGCTCTCTCCAAGCATGCAAATATTAAGCCTGTCATAACATCCACTGgtatgttctcttcttttccattccaattaagtttcctacccatcatgtttattaaataacacaccccttataaacaacacatacacatatgcaagattac--------

upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G55240.1 (Arabidopsis thaliana), 5'ss of exon 2
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgtt--agctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgta-atatttttgtataaaaatttatgtgtgcag
||| |||||||||| || ||||||||||| ||||| |||||||||||  ||||||| ||||| || |||||| ||||||  |  ||||||||||| || ||||  |  |||| |   ||   | |   | | |   ||  | ||| ||||||     | ||| ||| ||    |  | | |  | | | ||   || ||  | |  | 
CACATGATAGAGAAATGTTTGATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCACTCCTGTCATCACCTCTACTGgttttaattcctctctctctctctcctcttttttaatactt-tttacctttc-----cgtaa-tccttataaacacacaaacatatctgtacctatgtac-tctctaa