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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtagggggttgatggagtagcatgtatgttcttttatatttttgttgttttgctgattgtacaaatctttgtttgacacgtgtccatctttttattgtttag

Basic information

species Vitis vinifera
transcript Vv00s0313g00030.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38516635|gb|CF983810.1|CF983810
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|34549653|gb|CF517885.1|CF517885
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71858527|gb|DT007582.1|DT007582
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|37183648|gb|CF603002.1|CF603002
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|30128462|gb|CB913801.1|CB913801
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|352764443|gb|FQ472800.1|FQ472800
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|161705429|gb|FC057048.1|FC057048
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|161708098|gb|FC056489.1|FC056489
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71854764|gb|DT003819.1|DT003819
EST:     AAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: AAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71859639|gb|DT008694.1|DT008694
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|161716901|gb|FC068123.1|FC068123
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|110724909|gb|EE101147.1|EE101147
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|110710320|gb|EE086550.1|EE086550
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|161714330|gb|FC062631.1|FC062631
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|33409871|gb|CF215498.1|CF215498
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71855588|gb|DT004643.1|DT004643
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|351032719|gb|FQ462433.1|FQ462433
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|30136929|gb|CB922267.1|CB922267
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|352782495|gb|FQ470398.1|FQ470398
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|352794755|gb|FQ475253.1|FQ475253
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|352785495|gb|FQ477709.1|FQ477709
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCCGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|351016529|gb|FQ423956.1|FQ423956
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGGTGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|351018711|gb|FQ425613.1|FQ425613
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGCCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71857101|gb|DT006156.1|DT006156
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|351013796|gb|FQ433948.1|FQ433948
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|161718121|gb|FC068890.1|FC068890
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|71857389|gb|DT006444.1|DT006444
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
EST: gi|352764822|gb|FQ471882.1|FQ471882
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGGCAATCT                         TCAAATGTAAAGCAATCT
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCT
EST: gi|352773927|gb|FQ473059.1|FQ473059
EST:     CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCT                         TCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG
genomic: CAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTACAAGGCCAATCTgtaagtaggg ... tattgtttagTCAAATGTAGAGCAATCTGATCTTTGGACACCTTTGGTCAACCAAGGATGG