Sequence
atgc intronic sequence ATGC exonic sequenceCCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatatacatttcattcaggctcccagacaaattggtaaccaggatcaaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatat-acatttcattcaggctcccagacaaattggtaaccaggatcaaatt-
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CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttctttcatttttggctgtccttgctgatgttttttcattagcatgaaaattcattcatacatttgtata--tcagtatatggcatccattag
upper sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G31850.1 (Glycine max), 5'ss of exon 2
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatatacatttcattcaggctc-ccagacaaattggtaacc-aggatcaaatt
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CCATTGACAATCCTGCACTGGCCACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGgtgcatttattttttcattcaatcttagtatgaattaccctcttgctctcctatttactctcttgatttttacctgtgtggttgtcaacctatagacata--
upper sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G07450.1 (Glycine max), 5'ss of exon 2
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatatacatttcattcaggctc-ccagacaaattggtaacc-aggatcaaatt
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CCATTGACAATCCTGCACTTGCCACTTTCTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGgtgcatttattttttcattcaatctcagtatcaattaccctcttcctctcctatttactctcttgatttttacctgtgaggttgtcaacctataaacata--
upper sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G25470.1 (Glycine max), 5'ss of exon 1
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccact--attttttttcagggtttctactctttcatatacatttcattcaggctcccagacaaattggtaac-caggatcaaatt
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CCATTGACAACCTAGCAATGGCCACTTTCTGCCAACCAGTTGAGAAGGCTAATTCAAGTCACTCTTTCACTGAAGGACTGGCTCACAGTGTTGGTCTCAGgttcattttcatttcatcccatttcaatatcagtcacccccccccccccccccccctctctgtttttaaatttttttaccatgtgtgattgtagtgtcta---
upper sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S158_188V6.1 (Physcomitrella patens), 5'ss of exon 4
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATT-CCTTCACAACAGGACTGGCTCAC-AGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatatacatttcattcaggc--tcccagacaaattggtaaccaggatcaaatt----
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------GGGATGTGTTATGACAGCTCAGAAAGGAGAAGGTCGAGCATG--GATGCAGCCGATGATTTTCAATGGAGAAACATTTAACGAGTTTCATGCTCCTCGTGAGgtgtgtgtctcctcggttgttgatcctacagaagcgaccttttgtgagccagttgagaaggccaattctagtcattcttttactgctggtctagcagataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22013890|gb|BQ798924.1|BQ798924EST: AGCGTAGGGCTTAG GAAGCAACCGTTACGTGTATACAGCATGGTGAAGTATGCAGCCATAGCCCG
genomic: AGCGTAGGGCTTAGgtctgtattt ... tcaactgcagGAAGCAACCGTTACGTGTATACAGCATGGTGAAGTATGCAGCCATAGCCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatatacatttcattcaggctcccagacaaattggtaaccaggatcaaatt
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