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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGATCCTGTCATTGCTTTTTTGTTGGATGAAGTGGTTGTCAAAGATTGGTGCAAGCGGACGTTCAGAAACATTATAACAGAACTTCAAGGGATTTgtatcctttcaatttcttaatttgttgttgctggggcttattgttaatttatgccttcgttttttattttcctagttggagtgtcaagcccttaacatttccaatag

Basic information

species Vitis vinifera
transcript Vv00s0299g00030.t01
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0299g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G41590.1 (Glycine max), 5'ss of exon 3
TCCAGTGATCCTGTCATTGCTTTTTTGTTGGATGAAGTGGTTGTCAAAGATTGGTGCAAGCGGACGTTCAGAAACATTATAACAGAACTTCAAGGGATTTgtatcctttcaatttcttaatttgttgttg-ctggggcttattgttaatttatgccttcgttttttattttcctagttggagtgtcaagcccttaacatttccaatag
|||||||||||||||||||| |||||||||||||||||||| || || |||||||||||| |||| |||| |||||| ||  | ||||| || || ||||||||||||  |  || ||  ||||||| |  ||   ||| ||| ||| |  ||| | |  ||||  ||  |  || |||   |      |||| |  |||| || |||
TCCAGTGATCCTGTCATTGCATTTTTGTTGGATGAAGTGGTAGTGAAGGATTGGTGCAAGAGGACATTCAAAAACATCATTGCTGAACTGCAGGGAATTTgtatccttaaaccttgtttttttgttgatatctaaagctaattattagt--atgacct--ttttccataattatatttgttct------ccctaacaattttcactag

upper sequence: Vv00s0299g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G03840.1 (Glycine max), 5'ss of exon 3
TCCAGTGATCCTGTCATTGCTTTTTTGTTGGATGAAGTGGTTGTCAAAGATTGGTGCAAGCGGACGTTCAGAAACATTATAACAGAACTTCAAGGGATTTgtatcctttcaatttcttaatttgttgttg-ctggggcttattgttaatttatgccttcgttttttattttcctagttggagtgtcaagcccttaacatttccaatag------------------
||||||||||||||||| || |||||||||||||||||||| || || |||||||||||| |||| |||| |||||| ||  | ||||| || || ||||||||||||  |  || ||   |||||| |  ||   ||| ||| ||| | |       ||||||||     | || ||    |  ||  || | |  |||| || |||                  
TCCAGTGATCCTGTCATAGCATTTTTGTTGGATGAAGTGGTAGTGAAGGATTGGTGCAAGAGGACATTCAAAAACATCATTGCTGAACTGCAGGGAATTTgtatccttaaaccttgttttattgttgatatctaaagctaattattagtatga-----cgtttttt----ccataattatgtttgcactccatgacaattttcactagatgatatggacattttag

upper sequence: Vv00s0299g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G39810.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCAGTGATCCTGTCATTGCTTTTTTGTTGGATGAAGTGGTTGTCAAAGATTGGTGCAAGCGGACGTTCAGAAACATTATAACAGAACTTCAAGGGATTTgtatcctttcaatttct--taatttgttgttgctggggcttattgttaatttatgccttcgttttttattttcctagttggagtgtcaagcccttaacatttccaatag
|| |||||||| ||||||||||| ||| |||||||||| |||||||| ||||||  |||||| || ||| | | ||   || | ||||||||||  || |||||||||| |  |  |  || |||  |||| ||   |   | |||  |||| |||       |    | |  |||  |  | | |   ||||| |             
TCTAGTGATCCGGTCATTGCTTTCTTGCTGGATGAAGTTGTTGTCAAGGATTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatccttttagctgttaatatttttatgtttcttaag---actgtatatttgtgcaccg---taaggtctgtctatctttaatattg-gccctcag------------