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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaagaaaattaagtatacataatatgcacagatatgaatgtatttatttagttctttgatgtacgcag

Basic information

species Vitis vinifera
transcript Vv00s0250g00020.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856312|gb|DT005367.1|DT005367
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG                         GGAGTGATGAATAGGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|71860017|gb|DT009072.1|DT009072
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|110731715|gb|EE106367.1|EE106367
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|110725728|gb|EE102561.1|EE102561
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|110719002|gb|EE096483.1|EE096483
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|71858350|gb|DT007405.1|DT007405
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: gi|110723499|gb|EE100881.1|EE100881
EST:     AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG                         GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaagaaaattaagtatacataatatgcacagatatgaatgtatttatttagttctttgatgtacgcag

- - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - -  AAGAAA