Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggatggaatttctttggggaagaaaatcacatatggcatatgcacatctgattcacctttttacaaattctgttttacag

Basic information

species Vitis vinifera
transcript Vv00s0239g00110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0239g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
-----------------------------------------------GAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggatggaatttctttggggaagaaaatcacatatggcatatg--cacatctgattcacctttttacaaattctgttttacag
                                               | ||||||||||||||||| ||||||||||| || || |||  |  |  ||  |   ||    ||   || |   |||  |          ||| |    | ||  |||  | ||  ||   |              
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaattta-actcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag-------------