Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccctatgttgatattgcaatcaaataatttgttgtcag

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 2
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttact---------catta-gtagtatgtgcaaagagttctttccttccctttccaaccctatgttgatattgcaatcaaataatttgttgtcag----------------------
      |||||     |||||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||||||  |  ||||| | ||||||||  ||||||| |||   ||||          ||||  |  ||| |      | ||   ||  | | | |  |   | ||  ||  | | | |||    | |||  | |  |                      
TGACCTTGCAATGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGAATTGTGCCTTTATGTCTGAATCTgtaagtaatacatactggattgtcatattatatcttatattagttaaattaagtcaattcttctttagttc-atagtgtaaatactatcttccatttttatttttgttctttctcaaaacatgtttag

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttct-ttccttccctttccaaccctatgttgatattgcaatcaaataatttgttg-----tcag
|  | | ||||| |  || ||||| ||  | ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||| |||| |||     ||   ||     |      |    ||||| ||  ||   |  |  |   |||| || ||     ||    |  | | |||     ||||
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaataaacgcaaaccttttgtctattaccttactctgttctgttttttgtgtggcttatagtatgatgctaaaaagattgttttttcttttgatctttcag

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGTTATGCAAAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTgtaagaaattgttactcattagtagtatgtgcaaagagttctttccttccctttccaaccctatgttgatattgcaatcaaataatttgttgtcag
|  | | ||||| | ||||||||||||  ||||||| ||||||||||| || ||||||||||| || ||||| ||||| || ||| | ||||||||||| ||||  || |   |           | |||      |||| |   ||    | || || | ||  | | ||      |    ||  |   | | ||
AGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGgtaaagaactaaaatc---------tctgttttgttagttttgctctctgatctcaaaacgtaaatggctaagtttgttttctatatctctcttag