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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGGAAGGGTGAAGTTTTGAGGTTGCTTCTCTCCCTGCTCAAAATAGCTTGTCAGCACTATGGAAAATTCCGATCTCCTTTTGGCACTGACACCATAgtaagtgtggttaacatttttggccatctggttgagtactaactttcttattcttttgatgccccttttaattaacatggttgcactcatcatttaagag...

Basic information

species Vitis vinifera
transcript Vv00s0229g00030.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G47480.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTTAGGAAGGGTGAAGTTTTGAGGTTGCTTCTCTCCCTGCTCAAAATAGCTTGTCAGCACTATGGAAAATTCCGATCTCCTTTTGGCACTGACACCATAgtaagtgtggttaacatttttggccatctggttgagtactaactttcttattcttttg---atgccccttttaattaacatggt-tgcactcatcatttaagag
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------AAGAGGGAAACTCTTAAAGATGCTTCTTTCTTTGCTCAGAATATCTTGTCAGTATTATGGGAAACTCCGATCTCCTTTTGGCTCTGATGCATCGCAAAAGgtgagcaa-atcatgagatatcttgtcatttattttcttaagaaaaacattgtatatgttgcatttcctcatcttggtattcacactgcaaacag---