Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag

Basic information

species Vitis vinifera
transcript Vv00s0220g00030.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaa---attctcccgctt-tcgtctgtggttcaattgaaatctatgattttttttt----tcttaacat----tttcttgggtttttttag--------
|| || ||| | ||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||   || ||    |   ||   | |  |||| |   |  ||  |  |  |  ||    | | |  ||    | |||  |||||    |         
ACTGTGCCAGTTAACCCGAAGCCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgtaatctatacttttacccgtcacattttattcactgatatgcttaggctagtgattgaaatttcagaatgaaatctctgaggtttcaggaacattgaaa

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaa---attctcccgc-tttcgtctgtggttcaattg--aaatctatgattttttttttcttaacattttcttgggtttttttag--------------
|| || ||| | ||||| || || |||||||| ||| |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||   || ||    | ||||   | |  |||| ||   | ||   | |     |  ||   ||  |     ||   | | | ||              
ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgtaatctatacttttacctttcacttcttcttcacttattacatgcttaagccagtgcttgaaaatttcagaatgaaatctctgagatttcaggaaatcc

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G168252_T01 (Zea mays), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttc-aattgaaatctatgattttttttttcttaacattttcttgggtttttttag------------------------
|| || ||| | ||||| || || ||| |||| ||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||    ||| || |   |||  || || ||  | | ||||      |  |  |  |    |   |     |                          
ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTGTAATTGTCAAACTCAAGTGGGGTATGGAGTACAAAGgtaatttatcttatttttgtatccagtttgaactggaacattttatttgccagatactgcccctgctcttattcaaactgaaaaaattttattgtacatttccag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag--------------------------
||||| ||| | ||||| || || ||  |||| ||| |||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || || |  ||| ||       ||| || ||| |      |||| |||||  || | |  |   | | ||| |                            
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgt-------tcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G058252_T03 (Zea mays), 5'ss of exon 1
------------ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag--------------------------
            ||||| ||| | ||||| || || ||  |||| ||| |||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || || |  ||| ||       ||| || ||| |      |||| |||||  || | |  |   | | ||| |                            
CGTTTTGTGCAGACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgt-------tcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgta-aattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttctta-acattttcttgggttttt-----ttag-----------------------------------------------------
||  | ||| | ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||||||||||||||||||||||| ||||  | | |   |||||      ||  |||||||   ||||   || |||   | ||| || ||   ||  || |||     ||||                                                     
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttg--taatgagtcaattgt--tctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G07060.1 (Glycine max), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgta-aattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttctta-acattttcttgg--gtttttttag------------
||  ||||| | || || ||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||  | | |   |||||   || ||| |||||||   ||||   || ||    ||||| || ||   || |  ||| ||||              
ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtatgatgctttg--ctatggatcaattgt--tctactgttattccactcttacactttcatttcgctgttattttgttttatttttcag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G30220.2 (Arabidopsis thaliana), 5'ss of exon 2
------------ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag
            ||  | ||  | ||||| || || |||||||| |||||||| || ||| |||| || ||||| || || ||||||||||| |||||||||| ||| | |  |      || | | |  ||    ||| | ||  || | |  || |   | ||| |     ||   ||
TGTGTTTTGCAGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatatttttcttcaaaatgcttttgat-gataagtatcca-gagcttatatagctaacagtcttccttctacttcacag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G30220.1 (Arabidopsis thaliana), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag
||  | ||  | ||||| || || |||||||| |||||||| || ||| |||| || ||||| || || ||||||||||| |||||||||| ||| | |  |      || | | |  ||    ||| | ||  || | |  || |   | ||| |     ||   ||
ACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatatttttcttcaaaatgcttttgat-gataagtatcca-gagcttatatagctaacagtcttccttctacttcacag

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S219_41V6.1 (Physcomitrella patens), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtg--gttcaa-----ttgaaatctatgattttttttttcttaacattttcttgggtttttttag-------------
|| || ||  |||| || ||||||||  ||||  |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||    |     | |   |||| |   |||| |      ||   | ||    | || |     | |           ||| |||                
ACAGTGCCTGTGAATCCGAAGCCCTTTCTGAACGACTTGACTGGGAAGCCGGTCATTGTGAAACTCAAGTGGGGCATGGAGTACAAAGgtgctctgctttgttcctgtctctcctgttctaactgtctgggttgtacagctgttgtcgctgtgatgccgcaagctgttctttctattcatacccttcc

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ25557 (Selaginella moellendorffii), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcc-cgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag
||||| ||  |||| || ||||| ||  | ||| |  | || |||||| | ||||| || || ||||||||||| |||||||||||||||||| || |   ||| |    | |  ||   ||  ||   |  |   | |  |  ||  | |                  
ACCGTGCCTGTGAATCCCAAGCCGTTTCTCAATGAGCTCACGGGGAAGGCCGTCATGGTTAAGCTCAAGTGGGGCATGGAGTACAAAGgtaaactcgcaatgctgtttcttctcattgtcttctaacacaaaaaaatctggtctttcgcgtggcag-------------

upper sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ22338 (Selaginella moellendorffii), 5'ss of exon 2
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcc-cgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag
||||| ||  |||| || ||||| ||  | ||| |  | || |||||| | ||||| || || ||||||||||| |||||||||||||||||| || |   ||| |    | |  ||   ||  ||   |  |  | |  | | ||  | |                  
ACCGTGCCTGTGAATCCCAAGCCGTTTCTCAATGAGCTCACGGGGAAGGCCGTCATGGTTAAGCTCAAGTGGGGCATGGAGTACAAAGgtaaactcgcaatgctgtttcttctcattgtcttctaacacaaaaaatctggtct-ttcgcgtggcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585892|gb|CB008587.1|CB008587
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|34319677|gb|CF372431.1|CF372431
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|27580636|gb|CB003331.1|CB003331
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|32246334|gb|CD712153.1|CD712153
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110730178|gb|EE106958.1|EE106958
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110383296|gb|EC947661.1|EC947661
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110419842|gb|EC986096.1|EC986096
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|77578909|gb|DV218261.1|DV218261
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110426527|gb|EC992940.1|EC992940
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110686902|gb|EE063845.1|EE063845
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110380052|gb|EC945289.1|EC945289
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|27579125|gb|CB001820.1|CB001820
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|110731217|gb|EE109189.1|EE109189
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|27580948|gb|CB003643.1|CB003643
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|30125982|gb|CB911321.1|CB911321
EST:     GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|34549721|gb|CF517953.1|CF517953
EST:     GACTGGGAAGCCTGTCATCGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|34544804|gb|CF513036.1|CF513036
EST:     GACTGGGAAGCCTGTCATCGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|27586320|gb|CB009015.1|CB009015
EST:     GTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
EST: gi|34544882|gb|CF513114.1|CF513114
EST:     GACTGGGAAGCCTGTCATCGTCAAACTCAAGTGGGGAATGGAGTACAAAG                         GTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG
genomic: GACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctc ... gtttttttagGTTATCTCGTATCAGTGGATTCATACATGAACTTGCAG