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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatcttttactgatcgcacacttttattctcttttatttttctgatatcttattaatagaactaattttattatggtccag

Basic information

species Vitis vinifera
transcript Vv00s0207g00220.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g55850.1 (Oryza sativa), 5'ss of exon 2
TGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatcttttactgatcgcacacttttattctcttttatttttctgatatcttattaatagaactaattttattatggtccag----------------
||||| ||||| ||||||||||||  ||||||||||||||  | || ||||| ||||||||||||||||  || |||  ||   |||||    | ||||||| | || |   | |   |  ||||  |   |   |||  |    |  | | | |   |   | | || |    | |   |                    
TGATATTGGATAGGACAAACTGGAAGACCAACATGCTGACCGCTCTCTTGGTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtat-atatgcaaataccctgacacgctggctgcatttcttagcccacaaaacatgaaagatgtattagtaaactgacaattggcatcatgggattagggg

upper sequence: Vv00s0207g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G040030_T01 (Zea mays), 5'ss of exon 2
TGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgt--tt---catcttttactgatcgcacacttttattctcttt-tatttttctgatatcttattaatagaactaattttattatggtc-cag--------
||||| ||||||| ||||| ||||  ||||||||||||||  | || |||||||||||||||||||| |  || |||  |||  ||||     |  | ||||  ||   |   |    |  ||| |||      || |  | | |||| |   |||   || ||| |     | ||  | || | ||| ||         
TGATATTGGATCGCACAAATTGGAAGACCAACATGCTGACAGCTCTCTTGGTTCCTTACATTTTCTTCACCCTGCCTAATGTGCTGTTTTCTCTGATCAGgtgattaggcgcatcaaccctatctcacttaccaatccattgtgtattgtatggatcaattgttagttaccatgatagtttttttgtcacaatgggcaga

upper sequence: Vv00s0207g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G052423_T01 (Zea mays), 5'ss of exon 2
TGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTCGCTTTTGGTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatcttttactgatcgcacacttttattctcttttatttttctgatatcttattaatagaactaatt--ttattatggtccag---------------
||||| |||| || || |||||||  ||||||||||||||  | || |||||||||||||||||||| | ||| |||  |||  ||||     |  | ||||   ||     ||  |      |  |  ||||||  | |    |||  |   ||    | |  | |  ||  |||  ||| |                   
TGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGCTCTCTTGGTTCCTTACATTTTCTTCACTCTGCCTAATGTGCTGTTTTCTCTGATCAGgtg--attaggcacataaactctatctcaattctcactgaccagtcttgtgcattgcatagatcaattgttagttaccatgatagttttcatgtcactatgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385431|gb|EC949956.1|EC949956
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110364615|gb|EC927998.1|EC927998
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110378448|gb|EC943581.1|EC943581
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110402069|gb|EC968702.1|EC968702
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110399404|gb|EC965908.1|EC965908
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110389361|gb|EC954190.1|EC954190
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
EST: gi|110402082|gb|EC968715.1|EC968715
EST:     GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAG                         AGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT
genomic: GTTCCTTACATTTTCTTTAGTCTTCCTCCTGTATTGTTCAACTTATTGAGgtttcatctt ... tatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTT