Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactttcg...

Basic information

species Vitis vinifera
transcript Vv00s0203g00040.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g04620.1 (Oryza sativa), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggt--aattttattgttttcagtcgccaatgcttataggtatttattaatagaaaat-gttaactttcg
|||| ||||| ||||||||| |||||||  | | ||| || ||||  ||||||||||||||||| |||||||||     | | |  |  |   | ||    ||||  |  || |  ||  | | |    |    |||  || | || |  |||  || || |   ||| |    
ATGAGCCTGGGAAGCAAGTCCGGAGTGCTGTCAAGATCAAGAACATCAGCAAGTCTCATGTAGCATTTAAGgtaaattaacacaactcctctctgatggcttcttcatcaaactagatgctataccagtggttttgcaaat-gatagtagttaccagtaactcagtaagtag--

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os07g37270.1 (Oryza sativa), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaa-gagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttatag---gtatttattaatagaaaatgttaactttcg-----------------------------------------------
|| |||| ||  | || || ||||| || || ||||| || ||||| ||||||||||||||||| |||||||| || |  |  |  ||||| ||   ||      |  ||| | ||  |   |  |  |   |    |  ||   |  || |  | |    |||| || ||                                                   
ATCAACCAGGACAACAGGTGAGGAGCGCAATCAGGATAAAGAACACAAGCAAGTCTCATGTAGCATTTAAGgtttgtatgattgcatttgtaatgcttcccacagttttaactctacagcagttgg--gttgaaatctgcagcttgatttcagcagtgtttaatgctagctactatattggtaatgaaagcacctgactgttaactgatattttatctttag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G100328_T01 (Zea mays), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggtaattttattgttttcag----------tcgccaatgcttataggtatttattaatagaaaatgttaactttcg------------------------------------------------------------------------------
||||||| || ||||||||| |||| ||  ||||||| || ||||  |||||||||||||| ||||| ||||||   || ||  || | | | ||| || |   |  ||  |  ||  ||| | |          | || |||  |   |    | | ||  |||  |   ||| |  |                                                                                
ATGAACCCGGTAAGCAAGTCCGGAGCGCTGTTAGGATCAAGAACATCAGCAAGTCTCATGTGGCTTTCAAGgtaacaaccaattgtctcttagttaactacatgttatagctacatgctttgctgaaatgttcttttgcaaattttccaaccagtctgttcctaggcagctttaccactaactaccgcaactggtccaattgttaaaccctcagttcccatcagcagagcactgattctaagcatgtttgatgttccag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G06430.1 (Glycine max), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaaga-gtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactttcg
|||| || ||||| || || ||||||||||| |||||||||||||| || || ||| |||||||||| |||||||||  ||| | ||     |||  | || |    ||  |||   | |||    ||   | |    ||   | |   ||||         || | | |  
ATGAGCCGGGCAAACAGGTTAGGAGTGCCATCAGGATTAAAAACACCAGTAAATCTAATGTAGCTTTCAAGgtatggtgaaacatgtacaccattgtttttgttcctgttttttatatttttcttttccttatttgcaatttttgtcatttaagtacttccattgagtctt-

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G07260.2 (Glycine max), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactttcg-----
|||| || |||||||| |  ||||||||||| |||||||||||||| ||||| ||  | |||||||| |||||||   |||| |       || |        ||    ||    |||||||   |   ||        ||| | || | ||   |   | |    | | |     
ATGAGCCGGGCAAGCAGGGTAGGAGTGCCATCAGGATTAAAAACACCAGCAAATCCAACGTAGCTTTCAAGgtatactcaaacaaac----atatccacctcgttatctatgcctttgttttgcatattcatgttactgaggcactt-tcaaccaagggtctattatgttgaacat

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G32050.2 (Glycine max), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaa-gagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgct-tataggtatttattaatagaaaatgttaactttcg
   | || |||||||| |  | ||||||| | |||||||||||||| ||||| ||  |||||||||| |||||||   ||||  |   |||        || |||  |   || | |||  |   |  |  | ||    |     |   |    |  |  ||||| |   |  
---AGCCGGGCAAGCAGGCTAAGAGTGCCGTCAGGATTAAAAACACCAGCAAATCCAATGTAGCTTTCAAGgtatactcaaacaaacatgtacacctcgttatctatgcctttgttttgcatattgatgttactgaggcactttcaaccaacggtctattatgttgaacat--

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G32050.1 (Glycine max), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagag----------tttgtgatttat--cttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactt-tcg-----
   | || |||||||| |  | ||||||| | |||||||||||||| ||||| ||  |||||||||| |||||||   |||| |            | || || |||  |||   || | |  || ||  |  | || | |        |  ||| | |  |  |  | | |  ||   | ||      
---AGCCGGGCAAGCAGGCTAAGAGTGCCGTCAGGATTAAAAACACCAGCAAATCCAATGTAGCTTTCAAGGTATACTCAAACAAACATgtacacctcgttatctatgcctttgttttgcatattgatgttactgaggcactttcaaccaacggtctattatgttgaacattactactgtgtcaaagtt

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G05060.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactttcg
|||| ||||| |||||||||||||||||||||| |||||| || ||||||||||| |||||||| |||||||| ||   || |  ||    |    | |  |  ||||  | || |||||    |||     || ||||   |  | ||||        |  | |      
ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAAGgtttg--taatggattcaaaaacgttttgattatggt--tgttgttgtt----gtcattggtgtttatctctgctgattatcttggtttactcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724842|gb|EE101023.1|EE101023
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|161720975|gb|FC070690.1|FC070690
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|27581899|gb|CB004594.1|CB004594
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|33403462|gb|CF209089.1|CF209089
EST:     AAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTGATAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: AAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|26267184|gb|CA818247.1|CA818247
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110712576|gb|EE090353.1|EE090353
EST:     GGAGTGCCATTANGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349817619|gb|FQ407409.1|FQ407409
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|26265089|gb|CA816152.1|CA816152
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|30303167|gb|CB979961.1|CB979961
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCTTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349816674|gb|FQ404921.1|FQ404921
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|352768798|gb|FQ468010.1|FQ468010
EST:     ACGAGCAAGTCTCATGTAGC-TTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: ACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|27582368|gb|CB005063.1|CB005063
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349817581|gb|FQ407371.1|FQ407371
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGTGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|32457525|gb|CD798699.1|CD798699
EST:     AGTGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: A--GTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110713187|gb|EE088888.1|EE088888
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|33403546|gb|CF209173.1|CF209173
EST:     TAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: TAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110713517|gb|EE089505.1|EE089505
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349811199|gb|FQ406187.1|FQ406187
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|33407776|gb|CF213403.1|CF213403
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110374705|gb|EC939628.1|EC939628
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349827283|gb|FQ421556.1|FQ421556
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|22011514|gb|BQ796548.1|BQ796548
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|352768232|gb|FQ469407.1|FQ469407
EST:     GTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110711188|gb|EE087431.1|EE087431
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110711976|gb|EE089073.1|EE089073
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGAGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|37187338|gb|CF606691.1|CF606691
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349815417|gb|FQ400572.1|FQ400572
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|351053953|gb|FQ441719.1|FQ441719
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|351033212|gb|FQ461984.1|FQ461984
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349822581|gb|FQ412845.1|FQ412845
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|351028494|gb|FQ444775.1|FQ444775
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|349812778|gb|FQ410420.1|FQ410420
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110711176|gb|EE087405.1|EE087405
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110383168|gb|EC947523.1|EC947523
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
EST: gi|110720458|gb|EE096400.1|EE096400
EST:     GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAG                         TTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT
genomic: GGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaa ... tcttttatagTTTCAAACTACAGCACCTAAAAGCTGTTTTATGCGTCCTCCAGGGGCCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAACCTGGCAAGCAAGTCAGGAGTGCCATTAGGATTAAAAACACGAGCAAGTCTCATGTAGCTTTTAAGgtatggacaaagagtttgtgatttatcttctcttggtaattttattgttttcagtcgccaatgcttataggtatttattaatagaaaatgttaactttcg

- - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa