1 5' 3' | 2 5' 3' | 3 5' 3' |
TCATGGGGTTTTTTGTGACTACCCTAATTTTCATCATGGTGGGCATTATTGCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttcttttcattctccaatttctagtcggtacctgttgatccaatgttctttctctatgaatttaaagttgtttgctttgttcagtttcattcca...
species | Vitis vinifera |
transcript | Vv00s0187g00310.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTATEST: gi|30128935|gb|CB914274.1|CB914274
genomic: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
EST: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGGATTATEST: gi|27579135|gb|CB001830.1|CB001830
genomic: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGG-ATTAT
EST: GGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTATEST: gi|110405817|gb|EC971371.1|EC971371
genomic: GGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
EST: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTATEST: gi|30129093|gb|CB914432.1|CB914432
genomic: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
EST: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTATEST: gi|30126786|gb|CB912125.1|CB912125
genomic: GCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
EST: CTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCT GTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
genomic: CTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttct ... gttcctgcagGTTACACTTAACATTGGTTATTACAGCAACAGCGTGCTGTTGGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGGGTTTTTTGTGACTACCCTAATTTTCATCATGGTGGGCATTATTGCATCTCTTATGGTTAGAATCTGCTGCAACAGAGGCCCTTCTGCAAATCTgtatggttcttttcattctccaatttctagtcggtacctgttgatccaatgttctttctctatgaatttaaagttgtttgctttgttcagtttcattcca
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