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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCTGTGTCCTTGGGGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAGgttgaatttccaaactttatgtccttccactattttttgagatggagtcttggtttgttatccttgatgattctcattgtgattattgttgttgttctcttgtcttgtttggggatttag

Basic information

species Vitis vinifera
transcript Vv00s0125g00250.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 2
TTGTCTGTGTCCTTGGGGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAGgttgaatttccaaactttatgtccttcca---ctattttttgagatggagtcttggtttgttatccttgatgattctcattgtgattattgttgttgttctcttgtcttgtttggggatttag
| || || ||  | || || |||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| | || ||||| || ||| |||     | |     | ||||    | ||     |    |    || |        | ||  ||  ||||||  |     | |  |||| ||| |  ||| ||                    
TCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAACACATGCTAGAGATGCGCATAGTCTGgt-atgctactggtatatatgcatattcatgctcacaaatcacaatcgcaatcacatctgcaata-ttgatgtcttcttctttctttat-gttttaattcgct--------------------

upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 4
TTGTCTGTGTCCTTGGGGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAGgttgaatttccaaactttatgtccttccactattttttgagatggagtcttggtttgttatccttgatgattctcattgtgattattgttgttgttctcttgtcttgtttggggatttag
| || || ||  | || || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||| | || ||||| || |||||||     | |     | ||||    | | |    |    |     | ||    |     |||    ||     |   |||  |  |  || ||  | ||||   ||   | |        
TCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAGAGATGCGCATAGTCAGgt-atgctactggtatatatgcatattctcatgctcacaaatcacaatcaccatca--catctgcaata----ttgatgtcttcctctttctttctttctttctttacatag--------

upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G26000.2 (Arabidopsis thaliana), 5'ss of exon 3
TTGTCTGTGTCCTTGGGGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAGgttgaatttccaaactttatgtccttccactattttttgagatggagtcttggtttgttatccttgatgattctcattgtgattattgt-tgttgttctcttgtcttgtttggggatttag
| || || || ||||||||||| || |||||||||||||||||||| |||||||| || || || |||||||| |||||  |||| |||||||  |||||||  ||     ||| || |  | ||   |||        |||  ||   || ||||| |    |     || ||  | ||  |  | |  |      ||   | |                
TCGTTTGCGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATACTGGATATGCGAACCGTCAGgtaaaag----aaatttcagattctcttactgacacggtaga--gatcattcgtttgctcgattatgaaatccttctagttctggtaggataggagactaaagaca---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724679|gb|EE100720.1|EE100720
EST:     CAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAG                         GAATGATGGAATTGAGGATCAATATAGTATTTTGATAAGGTTTGACAATCA
genomic: CAGTTTTGTGGTTCATTCATTCAACACATGTTGGAAATGCGAATTGTCAGgttgaatttc ... ggggatttagGAATGATGGAATAGAGGATCAATATAGTATTTTGATAAGGTTTGACAATCA