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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag

Basic information

species Vitis vinifera
transcript Vv00s0125g00210.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g16430.1 (Oryza sativa), 5'ss of exon 11
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataaga-tgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
|  |||||||||||||| ||||||||||| ||||| ||||| |||||||||  | ||||||| || || ||    || |||||  | || ||   | || ||||            ||| ||||  | || | ||   | | || | |  || ||    ||   || | | | |     |  |                         
TTCCTTGAAATTCATCTCTTCTGGGCTGGCAAGGGCACTTGTTGCATACCTACTAATGGTTACTACGGGCCTATGATCTCAGCATTGAGCGTCTCTCCAAgtaagt----------ataattattaacttaacattgaaaaggactatgttggcttccactaagttggaccatttttttttcag------------------------

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52640.2 (Oryza sativa), 5'ss of exon 17
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaa---------atgatagttatagaattcatataatataagatgtc---ctgactggtgc-ttcttttgcca-actgcaactgaattggttgctgatttattttgctcag---
|   |||| |||||||| ||||||||||| ||||||||||||||||| |||  | | || || ||||| ||  | || ||||| || ||| |     || |||  ||  ||||         || || |||  || ||  | |  || ||   | |     | |||| ||| |||  |||  | | ||||  |   ||  |  | | |  | |||  |      
TTCGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGAACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTTTAAGCCCAAgtattccccttaactacaaatcatcatggttccagtatgaaaacgatgtattttctagggttaactgttgcattccattgtaagattgcatttttttttctaacaggtgaactttttttgttag

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52590.1 (Oryza sativa), 5'ss of exon 14
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
|  ||||| |||||||| ||||||||||| ||||| ||||||||||| ||| || | || || ||||| ||  | || |||||  | || | |  | || ||| |  || ||||  | | || |    ||| |   ||||    |||  |      || |      ||||  ||  | | |  |      | ||   | |  |||  
TTCCTTGAGATTCATCTCTTCTGGGCTGGCAAGGGTACTTGCTGCATTCCTCATCAAGGCTACTATGGGCCTGCAATATCAGCTTTGAGCGCTACTCCAAgta-ctgatctaaactagaatttttt--ttcgttctatatttc-tgttatactaactgttcacaacgccatttgggagtcatctaagatat-atcggtatacctc--

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 14
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTC---AGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
   ||||| |||||||| ||||||||||| ||||| ||||||||||| |||  | | || || ||||| ||  | || ||||| || |||||  |  |   ||||| |||  |||| |   | | || |   ||  |  ||    ||| | ||                                                         
---CTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTGTAATCCCTGCAGgtaccccccttaactacaaatcatgg---tcccaagatg---gattttctag-------------------------------------------------------

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 18
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAG-
   ||||| |||||||| ||||||||||| ||||| ||||||||||| |||  | | || || ||||| ||  | || || ||  | |||||     | |  |  || ||  | ||  |||| ||  |  | || ||| | | | |||||  |  || | |    || | |||  |    || |   | |  |   ||| || |    ||               
---CTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGGTCAAGGCTACTATGGGCCCACTATCTCGGCTTTGAGTGTAACCCCTGCAGgtactcaccttaactatagataatggttccaatatgaaa-atgatgtattttctagggtcagttgtacca-ttctgcctaa---gatcacattttttttctaacaagtgaacttcttgtcag

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgctt-cttttgc---caactgca--actgaattggttgctgatttattttgctcag
| | |||| |||||||| ||||||||||| ||||| ||||||||||| |||  | | || || ||||| || || || || || || ||| |     || |||  ||  |||| |   | | || |  |  |||| || || ||| |     |||| |    || ||||    || || |  |    |||  || ||  | | ||    | ||
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgat-tatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g52606.1 (Oryza sativa), 5'ss of exon 4
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAG-
    |||| |||||||| ||||||||||| ||||| ||||||||||| |||  | | |   ||||||| || || || || || || ||| |  |  | |  |  || | | | ||  | | ||   |  | ||| |  || | ||  | |  | | || |   ||  |       | || |   ||  ||||   | | |  | || | || |                   
---GTTGAGATTCATCTATTCTGGGCTGGCAAGGGTACTTGCTGCATTCCTACTCAAGACAATTATGGGCCCTCTATCTCGGCTCTGAGTTTAATCCCTGCAGgtactcctctgaacaacaattcatggttccattttgaaaacaatgtattttcagtgatcaactattgagtttcattgtaggccttcattgtaagataacattttattctaacaaatggacttcttttcag

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g16930.1 (Oryza sativa), 5'ss of exon 16
------------------------------------------------------------------------TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
                                                                        |  ||||| |||||||| || |||||||||||||||||||| ||  |||||  | | ||||| ||||| ||    || |||||  | |||||     || |||| |      | |      | |  ||     || ||||   || |  | |  | |  || ||||    |                                    
ATAAGGAAGATGGCGGGTGGAAAATCTTTTACTGCAGTCAACAGAAGTTATACTGCAAGAGTGTCCAAAAATTTCCTTGAGATTCATCTCTTTTGGGCTGgtaagggaacttgttgtgtacctactcaaggttactatgggccgatgatctcagcattaagtgtcacaccaagtaagcgcaaccattatgttatcttcaacaaggattatatggaatctaataa--gatcatttttttatacag-----------------------------------

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g10320.3 (Oryza sativa), 5'ss of exon 17
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
|  || ||||| ||||||||||||||||| ||||| ||||| ||||| |||  | | ||||| || || ||||  || |||||  | ||  |   | || |||| ||     ||| ||     || |  |||   |  || | ||  |||  || ||   |    |  |   | ||                               
TTCCTCGAAATCCATCTGTTCTGGGCTGGAAAGGGCACTTGTTGCATTCCTATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcct----aatcattaaggta-acctcaagaaggattatattgcctt-ctagtaaatgaaatctctgtttcag------------------------------

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G337532_T01 (Zea mays), 5'ss of exon 12
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
|  ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||| | || || ||||| ||  | || |||||||| ||||    | || ||| | ||| | ||   ||  |      |  | ||   |       | ||| |         |||||  || |   | | ||| |  | ||  | || |      | 
TTCCTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTTATAAGGGATACTATGGTCCTGCAATATCAGCCCTGAGTGCAACTCCAAgta-ctcatctgaactttaactt---gttctacattgcagttatactactgcccaagtgacattttg--aagtattaatcaat-gcatactagtgtagtcacaaaaa

upper sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag-----
| |||||| |||||||| ||||||||||| ||||| ||||| ||||| |||  | | || || || || ||  | || |||||  | ||||    | || |||  ||  ||| || | | | ||            || ||| || |  |   |  |     ||  |  || |    |  |  ||||| ||  |||     || |       
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagat-acaatcatc-----------atttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt