Sequence
atgc intronic sequence ATGC exonic sequenceATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctctaatgttggttaagcaacataatggattagccactgtggtatagttttattttatgccaagataaattggtatatttcaagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 19
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctctaatgt---tggttaagcaacataatggattagccactgtggtatagttttattttatgccaagataaattggtatatttcaagta---
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ATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTgtgagtgattctttaagaactctatctagttttagggtgtcatgattttgctgacaactcaagcacatgcttt---ccaaaatataatgagat---taaaataaga
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA09G18840.1 (Glycine max), 5'ss of exon 19
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctctaatgttggttaagcaacataatggattagccactgtggt-atagttttattttatgccaag-ataaattggtatatttcaagta-
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ATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTgtaagtgattc--tttaagaactctatccagttttatggtgtctca-tgattttgctgacaacttaagcacatgctttccaaaaaataatgagattaaaataa
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT1G47550.1 (Arabidopsis thaliana), 5'ss of exon 19
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctcta-------atgttggttaagcaacataat-ggattagccactgtggtatagttttattttatgccaagataaattggtatatttcaagta
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ATTTGCAGCACTTGCTACTCGTATGGAACAATACATACAAGGGCAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactgctatttctatgagtttatagcatttgactagtgaagttacacaaaccatgcaagcaaagaataatgtt-tgccacgtcaaac-agtaaacat------
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 19
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctcta-atgttggttaagcaaca-taatggattagccactgtggtatagttttattttatgccaagataaattg-gtatatttcaagta
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ATTTGCAGCACTTGCTACTCGTATGGAACAGTACATACAAGGGCAATCTAGAAATTTGGTTGATCAGGCGTACACAAAATTTgtgagtacagctatttttatgagtttatagaacatgactaatgaaattacacaaaccatgtaagca-ataatagacagtctctgattgcatatgatcttag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7593728|gb|AW707979.1|AW707979EST: CATCCAGGGACAATCTAGAGGATTTGGTTGATCAGGCATACACAAAATTT GTTACCATAATGTTTGTGACTTTGGAGAAAATTGCACAAACCGACCCAA
genomic: CATCCAGGGACAATCTAGAG-ATTTGGTTGATCAGGCATACACAAAATTTgtgagtactc ... tgtttgacagGTTACCATAATGTTTGTGACTTTGGAGAAAATTGCACAAACCGACCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctctaatgttggttaagcaacataatggattagccactgtggtatagttttattttatgccaagataaattggtatatttcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa