1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CAAGTTTGTTGGTGCTCAGGCCACTTCATCTGCTGCAGACCCTGCAGTAGGCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGgtaggcttcatttttctattggaataagtatacatctgccttatgcttcagccgaatacaaatccaacactgtaaaaacctcttggactactctggggtt...
species | Vitis vinifera |
transcript | Vv18s0001g07310.t01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAG GGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAACEST: gi|71865634|gb|DT014689.1|DT014689
genomic: GCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGgtaggcttca ... ttctctccagGGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAAC
EST: GCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAG GGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAAC
genomic: GCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGgtaggcttca ... ttctctccagGGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTTTGTTGGTGCTCAGGCCACTTCATCTGCTGCAGACCCTGCAGTAGGCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGgtaggcttcatttttctattggaataagtatacatctgccttatgcttcagccgaatacaaatccaacactgtaaaaacctcttggactactctggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa