Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtgattcttttaatttgttttccaagatgtgtatggtgctgccaaccgaagatgaaacataattatattaataagagtatggcatcatgtctatcttcttcgtgtgcatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 19
GAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtga--ttctttta-atttgttttccaagatgtgtatggtgctgccaaccgaaga------tgaaacataattatattaataagagtatggcatcatgtctatcttcttcgtgtgcatacag
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GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTAAAACCTATTCTTGATGAGgtaatgttctgttacacacacatttggagagtaatttaaatttg--aacctaaaagccttttgcaccgtcactactttcttttaaataagt--tcgaagttattttctttgaacac-tgcag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 18
GAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtgattcttttaatttgttttccaagatgtgtatggtgctgccaaccgaagatgaaacataattatattaataagagtatggcatcatgtctatcttcttcgtgtgcatacag
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GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTAAAGCCTATTCTTGACGAGgtgatattttg---ttacactc----atttgtagagtatttct--tcaattttgcaccatcggtgttttaa-----gta-agttccgagt-tattttctttggacac-tgcag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 19
GAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtgattcttttaatttgttttccaagatgtgtatggtgctgccaaccgaagatgaaaca-taattatattaataagagtatggcatcatgtctatcttcttcgtgtgcatacag
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GAGCTGCGAAAGGATGGTTTTGATCTTGCAGAAACTCGGTATCTTGAACTCAAACCCATTCTAGATGAGgtaag-cttgtaccacaattt---agtctctccttctcttctctctcgatactctaatagtgttaaaactggcccggacataataatggttgaatgtaatctgcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110405900|gb|EC971457.1|EC971457EST: TTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAG TTGGCCATACTAGAGGCAGAGCAGAAGGCTGAAGAGGCTGAAGGAGTGGAG
genomic: TTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtgattcttt ... gtgcatacagTTGGCCATACTAGAGGCAGAGCAGAAGGCTGAAGAGGCTGAAGGAGTGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGgtgattcttttaatttgttttccaagatgtgtatggtgctgccaaccgaagatgaaacataattatattaataagagtatggcatcatgtctatcttcttcgtgtgcatacag
- - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - GAGCTT