1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTGGAAGTCCTGAAAATTCAGATGAACTTCTGGTCTACTCTGGCATCGACCCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtccgtttgtttctactatttttttcccctcatgcgtttgtcttttactcttgttatcagttagtatagtaaaaaagaaaatatttattagaca...
species | Vitis vinifera |
transcript | Vv17s0000g04120.t01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAA AAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAATEST: gi|122691549|gb|EC980212.1|EC980212
genomic: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtcc ... gtaactgcagAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
EST: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAA AAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAATEST: gi|352777031|gb|FQ474338.1|FQ474338
genomic: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtcc ... gtaactgcagAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
EST: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAA AAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAATEST: gi|122691711|gb|EC982596.1|EC982596
genomic: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtcc ... gtaactgcagAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
EST: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAA AAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAATEST: gi|352782354|gb|FQ470257.1|FQ470257
genomic: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtcc ... gtaactgcagAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
EST: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAA AAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
genomic: CCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtcc ... gtaactgcagAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGAAGTCCTGAAAATTCAGATGAACTTCTGGTCTACTCTGGCATCGACCCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAgtgagtgtccgtttgtttctactatttttttcccctcatgcgtttgtcttttactcttgttatcagttagtatagtaaaaaagaaaatatttattagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa