Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGgtaaattttcatcatttctgttcagcaattatcctcctatcaacttcttggattgacgatttttttttttttttgtatgcattcatacacgactccag

Basic information

species Vitis vinifera
transcript Vv16s0098g00350.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 18
---GAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGgtaaattttcatcatttctgttcagca-attatcct-cctatcaacttcttggattgacgatttttttttttttttgtatgcattcatacacgactccag
   |  |  ||||| || |||   |||||  | ||||||||||||||| |||||||||||||||   ||| ||   | | |  || | | | | ||   ||      |||||   | |  |  | |      |||  | ||   | | |           
CATGTGGCAGAAGAACCCAAATCATTTTCCTCGTTCAGGGAACGGCTTCACCACTTGCAGgtaagcattcctcgcatatctgaaggagactgtactatatagttgtatcttgttgtaataacatctgacaagtttcatgtgttgtgacag----------

upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 18
---GAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGgtaa-attttcatcatttctgttcagcaattatcctcctatcaacttcttggattgacgatttttttttttttttgtatgcattcatacacgactccag
   |     ||||| || |||   |||||| ||||||||||||| ||| |||||||||||| || | ||   | || | ||  |   | |         |     ||  |   ||||   | |    | |    ||| |   || | |    ||     
CATGTGCCAGAAGAACCCAAATCGTTTTCTTCTTTCAGGGAACGACTTCACCACTTGCAGgcaagaattctctgatgtttgaacgagattggaatgttca--ggttttattttttgatattatcggctgtaacatgtgtatgttta-atgtaacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133456|gb|CB918795.1|CB918795
EST:     AAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAG                         AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGG
genomic: AAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGgtaaattttc ... acgactccagAGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGG