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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTACACTAACTCAGGACTAGCTCTATTAGCCCTTATCTCCAATGCTGTTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttttgttgtttcatttgctcctcttcctcctctcacttttgctgttctatttttaacgggttactactgcataattttcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02410.t01
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71879756|gb|DT028811.1|DT028811
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71878707|gb|DT027762.1|DT027762
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71880708|gb|DT029763.1|DT029763
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71879963|gb|DT029018.1|DT029018
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71863790|gb|DT012845.1|DT012845
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTTGTGCCCCAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71879582|gb|DT028637.1|DT028637
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71879455|gb|DT028510.1|DT028510
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71879339|gb|DT028394.1|DT028394
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71878846|gb|DT027901.1|DT027901
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71880267|gb|DT029322.1|DT029322
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71880607|gb|DT029662.1|DT029662
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71878134|gb|DT027189.1|DT027189
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71879171|gb|DT028226.1|DT028226
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71881027|gb|DT030082.1|DT030082
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
EST: gi|71881083|gb|DT030138.1|DT030138
EST:     TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAG                         TCTACTGCATATGTCGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC
genomic: TTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttt ... taattttcagTCTACTGCATATGTTGTGCCACAATTGTGGCAACCTGCCAATGGAACTCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCTACACTAACTCAGGACTAGCTCTATTAGCCCTTATCTCCAATGCTGTTCACAAACTTTGGAAATGGCAGCGTTCCGAAAGGAATCCGCTGGGAAAGgtttgcgttttgttgtttcatttgctcctcttcctcctctcacttttgctgttctatttttaacgggttactactgcataattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA