Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTgtaagtctcaatctaattactttaaggaaccttaaaacttggtatctggataggtttgacttggattttatttaattgctcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02320.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 19
GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTgtaagtctcaatctaattactttaaggaacctta--aaacttggtatctggataggtttgacttggattttatttaattgctcag
|||| ||||  || || ||||| ||||||||||||||||| || ||||||||||| |   |||| |      |  |    |  |  | ||   | | ||||   | ||    | || ||| |   || | ||
GAAACTATGTCCTCCAGTTTGCAGATGACTTCTCATACACAGACCCTgtaagtctgataataataaaaagttgatattcaagtatgcatgtactttcgatatact-gagcaagtttatatatttctgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031398|gb|FQ445423.1|FQ445423
EST:     GAAATTATGGACTTCAATTTGCGGATGACTTCTCATACACTGATTCT                         GTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGAT
genomic: GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTgtaagtctca ... aattgctcagGTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGAT
EST: gi|110429629|gb|EC996127.1|EC996127
EST:     GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT                         GTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACAGAT
genomic: GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTgtaagtctca ... aattgctcagGTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGAT
EST: gi|32249648|gb|CD715467.1|CD715467
EST:     GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT                         GTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACAGAT
genomic: GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTgtaagtctca ... aattgctcagGTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGAT