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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgcatgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 18
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgcatgcag--------------
| || || || | || ||| ||||| |||||||||||||||||  | |||||||||||||| || ||||||||||||||||| ||| | || ||||| ||||||| ||| | ||||| |   ||||   | | || | | ||  |  | |  |    || | ||     |||  |  |||  ||| |              
TTCCATTCTCAAGAACTGTCTACATCGAGCAGTCTGATTTTCGTGTAAAGGATTCAAAAGATTATTATGGGCTTGCTCCTGGTAAAACAGTACTACTAAGgtactagtaca-ttatacat-ctgtagactctgtacttaattagtttgcttactttgtatactttgtggtctcatctatgtttgccgtctgaaactgatag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 18
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgtt-cagatatcccat-taaaattgaga-atctttttcatgcatgcag----
| || || || | || ||| ||||||||| |  ||||||||||  | ||||| |||||||||||||||||||| || ||||| ||||| ||| | || |||||||| |   |  |      |   | | |  ||       | || ||| ||  | || | | | | | |   | |  ||     |   |    
TTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTAAAGGACTCAAAAGACTACTATGGGCTAGCCCCTGGTAAATCTGTCATGCTAAGgtactttttcgagaaggttgatctgaatctagttgcctgtctattgcagctactcaatatgacagtaacatgccgtggtcccttgtattgctag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 17
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtac-ttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgcatgcag-------
| || || || | || ||| ||||||||| |  ||||||||||  | ||||| |||||||||||||||||||| || ||||| ||||| ||| | || |||||| || |   |  |      |   | | |  ||  | |  | ||       | || ||  || |  |       |  | | |  |        
TTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAAGgtacattttccgagaaggttgatctgaatctagttgcttatctattgcagctactcaatatgatggtaacatgacatggtcccttaaattactag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgc-atgcag
|  | ||||||||  ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| ||  |||||||||  | ||| ||      || |  |||| |   |    | || |  ||          || ||| | ||| ||  | ||    |||||
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaaggcacaaattgatattgtgagtgagaatttat--aggc------ccaatattcaaaattttcattattttgtgcag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgcatgcag
| || ||||||||  ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| ||  |||||||||  | ||| ||   || || ||| || || |  ||     | |  || |     ||| ||| |    ||  ||||  ||||     
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaag-gtacaaattg-atattgtgaatgagaatttataggtccagtattcaaaattttcattatttt-gtgcag----

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 18
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaat-ctttttcatgc---atgcag
| || || || | | ||||||||||||| || ||||| || || ||||||||||||||||| || |||||||| || ||||| ||||| ||  | || |||||  |  |||   | ||   |  |  ||  |   ||  |||        || |  ||   | | |   | |||  |  |||    |||||
TACCGTTCTCTAGAGTTGTATACATTGACCAATCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTTTTGCTAAGgtatatagaaagggacagttttcatcattactacttttgctttgaatatgattcagttgtgactaaacgtgcttcctgctgctctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329220|gb|CD012482.1|CD012482
EST:     TGGAAAATCCGTCCTACTCAG                         GTATGCATTCCCTATAAAGTGCACAGAAGTGATCCTTAGTGATGATAAGGA
genomic: TGGAAAATCCGTCCTACTCAGgtacttgtaa ... atgcatgcagGTATGCATTCCCTATAAAGTGCACAGAAGTGATCCTTAGTGATGATAAGGA
EST: gi|33404073|gb|CF209700.1|CF209700
EST:     GATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAG                         GTATGCATTCCCTATAAAGTGCACAGAAGTGATCCTTAGTGATGATAAGGA
genomic: GATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaa ... atgcatgcagGTATGCATTCCCTATAAAGTGCACAGAAGTGATCCTTAGTGATGATAAGGA